genome.fa.s7379.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007379.1 Hibiscus syriacus cultivar Beakdansim tig00019816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78111

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853--2037	32	5.8	32	84	5	234	28	17	19	34	1.95
4895--4950	18	3.1	17	73	17	51	57	1	0	41	1.09
14640--14758	59	2.0	59	91	3	195	28	16	20	34	1.94
17214--17297	41	2.0	41	86	0	114	36	20	17	25	1.94
18612--18637	9	2.9	9	100	0	52	30	46	23	0	1.53
22237--22296	17	3.7	16	74	22	54	43	0	0	56	0.99
22237--22308	37	2.0	35	89	5	108	47	1	0	51	1.09
22675--22739	23	2.8	23	83	6	69	72	6	21	0	1.06
23581--23639	18	3.3	18	75	13	59	35	0	1	62	1.05
23592--23654	24	2.6	24	75	12	58	34	0	3	61	1.12
24337--24388	20	2.6	21	76	11	56	26	7	0	65	1.20
28724--28753	2	15.0	2	100	0	60	50	0	0	50	1.00
33762--33816	22	2.5	22	87	0	83	34	10	14	40	1.81
34492--35285	77	10.4	77	97	0	1443	22	20	21	35	1.96
35409--35475	35	2.0	32	88	8	98	47	1	0	50	1.10
35843--35909	23	2.8	24	81	6	73	71	5	22	0	1.07
36739--36799	18	3.3	18	80	11	61	34	0	1	63	1.04
42044--42082	19	2.1	19	100	0	78	46	17	5	30	1.70
42975--43170	84	2.3	84	78	6	200	25	21	28	25	1.99
42912--43170	42	6.2	41	72	7	155	23	20	27	28	1.99
43210--43592	84	4.6	83	76	9	354	21	18	25	34	1.96
43210--43664	42	10.9	42	76	5	312	21	18	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43295--43407	36	2.9	38	74	12	106	24	17	26	30	1.97
43209--43584	162	2.3	164	79	7	377	20	18	25	35	1.95
45561--45681	36	3.4	35	86	2	152	39	14	19	26	1.90
46342--46572	103	2.2	103	82	3	259	32	17	19	30	1.95
47981--48477	269	1.9	266	90	2	798	26	16	19	37	1.93
52004--52107	55	1.9	55	82	7	131	45	15	20	19	1.86
71203--71257	23	2.4	23	87	0	74	52	20	14	12	1.73
73084--73135	23	2.3	23	86	0	68	19	11	23	46	1.82
76626--76710	39	2.2	39	95	0	152	28	16	9	45	1.78
76662--77181	171	3.0	172	90	4	806	33	11	16	38	1.85

Tables:   1

The End!