genome.fa.s738.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000738.1 Hibiscus syriacus cultivar Beakdansim tig00001428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104846

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4710--4740	16	2.0	16	93	6	55	16	0	0	83	0.64
5329--5374	2	23.0	2	100	0	92	50	0	0	50	1.00
6357--6442	29	3.1	29	83	8	90	30	9	10	50	1.68
7407--7563	76	2.1	76	96	0	287	18	12	17	50	1.77
10720--10810	4	23.8	4	83	6	84	69	1	27	2	1.07
20931--21033	36	2.9	36	98	0	197	41	17	17	23	1.90
23748--23801	18	3.0	18	94	0	99	31	33	18	16	1.93
26873--27223	76	4.5	77	81	8	338	34	20	18	26	1.96
26899--27233	78	4.3	78	82	7	389	35	20	17	25	1.95
37685--37931	122	2.0	123	92	3	417	34	11	19	34	1.87
38211--38275	25	2.6	25	95	0	112	24	9	4	61	1.45
42634--42826	81	2.3	82	81	7	228	29	18	17	34	1.94
42809--42951	42	3.5	42	85	1	191	27	21	18	32	1.97
43095--43149	21	2.6	21	88	0	83	29	43	7	20	1.78
43980--44017	20	1.9	20	88	0	58	21	26	10	42	1.85
50936--50974	13	3.0	13	100	0	78	23	23	15	38	1.92
51605--51657	20	2.7	20	93	0	88	24	28	20	26	1.99
52230--52381	20	8.1	19	80	11	152	12	21	22	44	1.85
52235--52311	39	2.0	39	87	5	111	9	19	25	45	1.80
55824--55859	14	2.6	14	95	0	63	30	0	25	44	1.54
55966--56019	20	2.8	19	83	5	72	50	18	18	12	1.78
56028--56154	33	3.9	32	86	8	184	15	22	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56021--56153	66	2.0	66	95	0	239	17	21	18	42	1.90
58644--58697	24	2.2	24	86	0	72	38	20	14	25	1.91
59757--59814	20	2.9	20	94	0	98	37	22	22	17	1.93
59838--59891	14	3.5	14	77	22	63	11	20	20	48	1.80
59820--59890	33	2.2	33	84	0	88	19	19	21	39	1.93
59833--59910	33	2.4	33	91	0	120	12	23	21	42	1.87
59998--60034	14	2.6	14	86	0	56	48	21	0	29	1.50
61907--61958	20	2.7	19	82	5	68	38	23	23	15	1.92
61900--62001	19	5.6	19	73	14	81	43	23	20	12	1.86
61958--62015	14	3.9	14	79	16	71	48	25	17	8	1.75
61942--62020	32	2.4	33	95	2	142	46	24	18	10	1.80
62027--62122	19	5.6	17	70	21	69	11	18	21	47	1.80
62032--62122	32	2.8	33	89	3	148	10	17	21	49	1.77
62049--62106	14	3.9	14	75	16	62	8	15	24	51	1.71
62107--62161	20	2.8	19	83	8	65	16	23	23	36	1.94
62643--62687	18	2.5	18	88	0	72	13	15	44	26	1.83
64007--64044	20	1.9	20	88	0	58	50	21	15	13	1.78
64560--64637	41	1.9	41	89	0	120	23	16	20	39	1.92
64520--64634	20	5.7	20	76	5	97	24	17	22	35	1.95
76093--76215	31	4.0	31	93	4	196	37	21	19	21	1.94
80216--80338	31	4.0	31	94	2	203	37	22	19	20	1.94
96739--96813	28	2.7	27	74	12	71	26	1	21	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96769--96847	7	11.1	7	82	2	59	32	0	20	46	1.51
97099--97152	21	2.4	23	78	9	67	20	1	31	46	1.61
97168--97224	30	1.9	30	88	0	87	17	1	28	52	1.54
97183--97224	15	2.8	15	79	10	50	16	0	30	52	1.44
97197--97260	21	3.0	22	84	11	89	20	1	28	50	1.58
97105--97274	14	11.8	14	70	14	69	20	3	26	49	1.65
97296--97335	21	1.9	21	85	10	55	22	0	27	50	1.50
97478--97526	22	2.2	21	85	7	62	18	4	28	48	1.66
97523--97569	22	2.1	22	92	0	76	25	0	21	53	1.46
97523--97577	22	2.5	22	85	5	67	25	1	21	50	1.58
97670--97767	37	2.7	36	75	14	94	20	1	25	53	1.52
97729--97761	14	2.4	14	94	0	57	15	0	27	57	1.38
97751--97794	14	3.2	14	80	3	54	29	0	20	50	1.49
97751--97794	21	2.2	20	83	4	52	29	0	20	50	1.49
97829--97869	14	2.9	14	92	0	73	21	0	31	46	1.52
97816--97869	28	1.9	28	85	7	74	22	1	31	44	1.63
97829--97868	21	1.9	21	84	0	53	20	0	32	47	1.50
98126--98176	7	6.8	8	78	13	54	25	0	21	52	1.47
98116--98175	15	4.1	15	79	10	70	26	0	25	48	1.52
98104--98176	37	2.0	37	89	5	112	26	0	24	49	1.51
98249--98303	14	3.8	14	80	7	56	20	0	25	54	1.44
98243--98309	29	2.3	29	89	0	107	17	0	26	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98243--98305	15	4.4	14	82	6	72	19	0	26	53	1.45
98314--98383	22	3.1	22	70	13	54	21	1	27	50	1.57
104295--104321	2	13.5	2	100	0	54	51	0	0	48	1.00
104325--104356	2	16.0	2	100	0	64	50	0	50	0	1.00

Tables:   1

The End!