Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007381.1 Hibiscus syriacus cultivar Beakdansim tig00019833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118051

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8086--8112
14
1.9
14
100
0
54
14
44
3
37
1.63
9422--9463
17
2.4
17
88
8
57
11
0
4
83
0.79
9436--9468
16
2.0
17
88
5
50
12
0
9
78
0.95
10223--10256
2
17.5
2
93
6
61
50
0
0
50
1.00
18804--18923
58
2.1
59
88
1
179
26
16
23
33
1.96
23196--23317
60
2.1
59
88
1
181
26
17
22
33
1.96
26010--26068
2
29.5
2
100
0
118
49
0
0
50
1.00
28163--28259
51
1.9
50
85
6
133
53
12
15
18
1.72
29446--29609
67
2.4
67
85
0
220
39
15
20
25
1.91
32393--32438
8
5.5
8
82
7
56
0
19
0
80
0.71
41628--41652
5
5.0
5
100
0
50
20
0
20
60
1.37
43076--43144
34
2.0
34
91
0
111
30
23
17
28
1.97
43104--43270
79
2.1
79
85
0
226
29
23
19
26
1.98
43230--43307
37
2.1
37
90
0
120
35
19
19
25
1.95
43151--43383
116
2.0
116
88
1
342
31
23
21
24
1.98
43392--44000
134
4.6
134
90
2
906
31
23
17
27
1.97
43392--43993
267
2.3
267
89
2
931
31
23
17
27
1.97
49609--49641
10
3.4
10
83
8
50
69
0
3
27
1.03
49594--49644
19
2.7
19
90
3
86
66
0
7
25
1.18
51201--51257
2
29.5
2
92
7
100
49
0
0
50
1.00
51885--52059
34
5.2
34
78
6
176
36
19
14
30
1.91
51885--52059
66
2.6
67
81
8
221
36
19
14
30
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52925--53096
29
6.2
29
76
10
137
33
1
17
47
1.58
58550--58752
29
7.1
29
84
5
218
29
3
18
48
1.64
59465--59522
24
2.4
25
80
8
75
31
6
18
43
1.77
65134--65188
19
2.7
20
77
8
58
30
14
29
25
1.95
65076--65265
96
2.0
95
86
5
267
33
15
24
26
1.95
65079--65276
95
2.1
95
84
4
256
33
15
23
27
1.95
65696--66002
79
3.9
79
93
0
508
35
10
25
28
1.89
65696--66002
157
2.0
157
93
0
524
35
10
25
28
1.89
71456--71490
2
17.5
2
93
0
61
48
0
0
51
1.00
73080--73460
116
3.3
115
89
2
559
27
20
20
31
1.97
73254--73644
190
2.1
190
93
0
665
29
20
19
30
1.97
73360--73528
74
2.3
74
94
0
293
30
21
18
28
1.97
73434--73998
116
4.9
116
92
0
932
27
21
20
30
1.98
73128--73757
306
2.1
306
90
1
994
28
20
20
30
1.97
73856--73918
21
2.9
23
68
15
62
17
23
23
34
1.96
74657--74711
22
2.5
22
90
0
83
38
12
12
36
1.82
74951--75004
26
2.0
27
89
3
83
37
7
20
35
1.81
75038--75191
54
2.8
53
88
3
218
24
27
14
33
1.94
78070--78130
5
12.0
5
73
16
54
3
16
0
80
0.84
78069--78145
28
2.8
27
82
9
86
2
16
0
80
0.82
78071--78124
23
2.4
22
81
12
65
1
16
0
81
0.78
78067--78140
15
5.1
15
72
18
50
4
16
0
79
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78615--78651
15
2.3
17
90
9
60
0
18
0
81
0.70
83511--83559
25
2.1
23
82
17
57
51
0
0
48
1.00
86630--86657
2
14.0
2
100
0
56
50
0
0
50
1.00
96567--96615
14
3.6
14
73
18
50
55
4
2
38
1.31
96579--96641
11
5.9
11
74
23
55
58
1
1
38
1.17
96567--96620
25
2.2
24
87
6
74
57
3
1
37
1.27
98310--98362
27
2.0
27
96
0
97
50
13
7
28
1.68
99735--100173
55
8.0
55
81
6
428
30
23
16
28
1.96
99738--100106
111
3.3
111
88
1
519
31
22
16
28
1.96
99735--100152
166
2.5
164
83
5
491
31
23
16
28
1.96
101533--101663
7
18.7
7
67
22
62
8
16
0
74
1.11
101515--101684
41
4.4
41
78
15
161
10
15
0
74
1.11
101595--101689
9
10.1
9
73
18
70
9
15
0
74
1.06
101595--101689
19
5.1
17
70
16
55
9
15
0
74
1.06
101573--101696
64
2.0
60
80
17
137
8
16
0
75
1.05
113060--113095
10
3.8
10
85
14
58
77
0
0
22
0.76
113060--113095
18
2.0
18
100
0
72
77
0
0
22
0.76
113191--113243
27
2.0
26
96
3
97
49
16
7
26
1.73
113460--113502
18
2.3
18
88
8
59
53
20
0
25
1.46

Tables:   1

The End!