genome.fa.s7383.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007383.1 Hibiscus syriacus cultivar Beakdansim tig00019839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57431

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452--562	55	2.0	56	98	1	215	20	25	14	39	1.90
1021--1065	21	2.1	21	87	0	63	22	24	17	35	1.95
1055--1161	20	5.3	20	78	4	117	37	21	20	20	1.95
1155--1217	20	3.1	21	86	10	80	33	25	17	23	1.96
2053--2106	24	2.2	24	93	0	90	20	18	20	40	1.91
4470--4577	20	5.7	20	78	15	122	33	24	24	18	1.97
4572--4644	33	2.2	34	90	2	112	46	17	21	13	1.83
4665--4729	32	2.0	33	90	6	105	13	21	16	47	1.82
4675--4740	32	2.1	32	88	0	96	15	22	18	43	1.87
4857--4893	14	2.6	14	86	0	56	48	21	0	29	1.50
6847--6933	20	4.3	20	95	0	147	37	24	19	18	1.94
6958--7102	20	7.9	20	74	18	93	17	19	21	42	1.90
6986--7079	33	2.8	34	78	3	118	13	19	22	44	1.85
8968--9018	20	2.5	20	90	0	75	52	23	11	11	1.70
9389--9454	22	3.0	22	84	0	87	22	13	37	25	1.91
9650--9723	20	3.7	20	80	3	94	18	21	21	37	1.94
9632--9723	20	4.6	20	77	5	78	19	21	22	35	1.96
9632--9723	41	2.3	40	92	1	148	19	21	22	35	1.96
9658--9745	41	2.1	41	85	0	113	25	19	21	34	1.96
10086--10147	32	1.9	32	93	0	106	24	3	43	29	1.70
15452--15527	28	2.6	28	85	4	89	32	3	18	44	1.68
17035--17084	20	2.5	20	80	3	66	28	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19782--20064	136	2.1	136	89	3	444	30	14	15	39	1.87
26285--26324	20	2.2	18	86	13	55	37	10	20	32	1.85
26820--27070	138	1.8	138	90	1	405	30	11	17	41	1.84
32398--32422	12	2.1	12	100	0	50	56	0	32	12	1.36
37045--37092	21	2.3	21	96	0	87	39	22	22	14	1.91
40345--40397	22	2.5	21	91	8	90	26	9	3	60	1.45
40577--40624	20	2.4	20	92	0	78	35	14	20	29	1.93
40949--41028	22	3.6	22	83	6	99	38	12	11	37	1.79
41383--41946	112	4.9	112	86	7	705	38	15	19	25	1.92
41383--41826	225	2.0	224	91	3	732	38	16	19	25	1.92
42304--42428	3	42.7	3	77	7	114	32	0	0	66	0.98
42310--42384	26	3.1	25	75	12	77	30	1	0	68	0.98
43771--43815	22	2.1	22	88	12	67	28	0	4	66	1.11
43882--44188	145	2.1	143	84	10	367	39	7	7	46	1.59
44025--44063	21	1.9	20	85	15	53	46	5	0	48	1.24
44697--44849	79	1.9	80	87	1	227	30	18	16	35	1.93
44771--45019	118	2.1	118	84	1	338	28	21	13	36	1.92
46469--46854	54	7.0	52	75	13	262	41	18	9	30	1.82
46577--46785	112	1.9	111	85	1	292	44	17	8	29	1.79
46408--46843	166	2.6	163	81	7	468	41	18	9	30	1.82
49181--49513	165	2.0	165	94	0	576	28	17	23	30	1.97
52779--52842	29	2.2	29	81	8	69	53	9	15	21	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52797--52859	29	2.1	29	88	2	90	49	9	17	23	1.76
53390--53420	14	2.3	14	94	5	55	6	16	0	77	0.97
54421--54533	45	2.5	44	83	11	129	46	13	6	33	1.68
54681--54725	15	2.8	17	80	13	58	37	8	11	42	1.72
54760--54907	77	1.9	77	89	5	228	41	7	12	39	1.71

Tables:   1

The End!