genome.fa.s7387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007387.1 Hibiscus syriacus cultivar Beakdansim tig00019863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70328

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58--105	24	2.0	24	84	12	62	45	0	0	54	0.99
70--115	19	2.4	19	82	7	58	47	0	0	52	1.00
71--120	20	2.6	19	79	17	59	48	0	0	52	1.00
4172--4966	102	7.9	102	85	4	961	27	26	28	17	1.98
4168--4966	306	2.6	302	89	2	1192	27	25	29	17	1.98
7610--7694	35	2.5	35	84	1	100	41	20	1	37	1.60
7663--7705	21	2.0	21	100	0	86	46	13	0	39	1.44
7826--7859	16	2.0	18	88	11	54	26	2	5	64	1.30
8321--8565	130	1.9	127	89	2	382	37	12	14	35	1.85
9587--9636	18	2.8	18	76	14	59	48	0	6	46	1.27
9812--10312	174	2.9	174	84	4	670	39	19	16	23	1.91
17977--18050	36	2.1	36	82	5	87	47	1	0	51	1.09
21297--21352	27	1.9	28	86	13	78	55	5	7	32	1.50
21880--21990	35	3.2	35	84	0	141	45	18	0	35	1.56
23043--23155	35	3.2	34	79	9	122	34	0	18	46	1.56
23399--23424	2	13.0	2	100	0	52	50	0	0	50	1.00
23653--23682	2	15.0	2	100	0	60	50	0	0	50	1.00
24172--24201	10	3.1	10	95	4	53	63	0	0	36	0.95
25757--25817	32	1.9	31	83	9	79	39	8	11	40	1.71
26278--26339	28	2.1	30	85	5	83	45	6	9	38	1.63
26273--26332	28	2.0	30	87	9	88	48	5	8	38	1.55
28606--28648	5	8.6	5	94	0	77	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28777--28821	2	22.5	2	100	0	90	48	0	0	51	1.00
32785--32894	57	1.9	56	80	10	125	41	10	17	30	1.83
42529--42570	10	4.1	10	84	6	57	14	0	2	83	0.75
42522--42566	17	2.6	17	82	3	54	15	0	2	82	0.77
42516--42566	18	2.8	18	77	11	52	17	1	1	78	0.94
42529--42570	21	2.0	20	86	4	57	14	0	2	83	0.75
42601--42668	24	2.8	24	95	0	118	26	1	23	48	1.59
47750--47819	31	2.4	30	83	9	90	38	11	10	40	1.75
47788--47845	28	2.1	28	80	6	64	37	10	12	39	1.77
47954--48035	32	2.7	29	80	10	101	42	13	8	35	1.75
49000--49051	25	2.1	25	85	7	70	5	21	3	69	1.26
49474--49606	59	2.2	59	83	9	155	33	15	15	35	1.89
51059--51124	3	22.0	3	100	0	132	33	0	66	0	0.92
52375--52532	21	7.8	20	70	7	77	37	24	17	19	1.93
52500--52810	20	15.5	20	81	6	79	34	26	19	20	1.96
52500--52889	40	9.7	40	87	2	439	35	25	18	20	1.95
52538--52889	20	17.6	19	85	5	398	34	25	18	21	1.96
53564--53610	24	2.0	24	87	8	69	25	14	21	38	1.92
53785--53809	12	2.1	12	100	0	50	72	0	28	0	0.86
56091--56363	19	15.4	19	80	15	336	46	17	21	13	1.83
56095--56180	34	2.6	33	85	7	111	47	18	20	12	1.81
56119--56385	52	5.0	52	92	5	437	46	16	22	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56119--56385	109	2.5	105	90	7	441	46	16	22	14	1.83
56392--56473	19	4.6	18	78	18	100	14	24	18	42	1.87
56579--56615	14	2.6	14	91	0	65	45	21	0	32	1.52
58564--58620	14	3.7	14	77	20	60	45	22	21	10	1.82
58545--58637	33	2.8	33	95	0	168	47	21	20	10	1.80
58508--58642	19	7.6	19	76	16	128	45	23	19	11	1.82
58638--58729	33	2.8	33	91	3	141	7	17	28	46	1.75
58638--58766	19	7.3	19	73	17	116	8	16	28	46	1.76
58810--59188	92	4.1	93	98	1	719	46	18	12	22	1.82
60880--60969	14	5.7	14	74	23	81	42	23	25	8	1.83
60872--60986	33	3.5	33	95	0	212	45	20	24	9	1.81
60879--60991	19	6.8	18	72	23	88	43	22	24	9	1.83
61003--61057	14	3.6	14	73	21	56	9	25	23	41	1.83
60987--61057	33	2.2	33	94	0	124	8	22	25	43	1.81
60998--61079	33	2.5	33	89	2	119	9	25	21	42	1.84
61010--61098	20	4.8	20	72	19	75	12	24	19	43	1.85
61177--61247	33	2.2	33	92	0	115	47	18	22	11	1.80
61621--61775	20	7.7	20	84	4	213	21	20	25	32	1.97
61620--61813	40	4.8	40	82	1	210	19	19	25	35	1.95
61621--61813	60	3.2	60	82	0	242	19	19	25	35	1.96
62940--63080	57	2.5	57	97	0	264	41	20	19	19	1.91
63054--63103	20	2.5	20	90	0	82	42	24	22	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62997--63142	77	1.9	77	91	0	238	40	21	19	17	1.91
63378--63467	37	2.4	37	92	0	153	20	14	21	44	1.86
63334--63524	94	2.0	94	86	0	265	25	14	18	41	1.88
63415--63538	57	2.2	57	88	0	185	21	16	19	41	1.90
63515--63558	20	2.2	20	91	0	70	13	25	18	43	1.86
63457--63618	77	2.1	78	83	5	213	24	18	17	39	1.92
64877--64903	12	2.2	12	100	0	54	14	37	11	37	1.82
69578--69650	26	2.9	25	84	8	94	36	0	0	63	0.95
69590--69650	26	2.3	27	91	8	99	37	0	0	62	0.96
69578--69637	3	20.7	3	79	19	65	33	0	0	66	0.92

Tables:   1

The End!