genome.fa.s7390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007390.1 Hibiscus syriacus cultivar Beakdansim tig00019904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75715

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5065--5112	25	2.0	24	91	4	78	56	2	4	37	1.30
12866--12952	32	2.7	32	90	0	147	32	19	9	39	1.83
15583--15628	24	1.9	24	90	0	74	23	34	15	26	1.94
15930--15983	24	2.5	22	85	14	76	31	9	20	38	1.84
15938--15984	24	2.0	24	100	0	94	29	8	19	42	1.80
16280--16442	90	1.8	89	91	1	272	38	10	7	43	1.67
16415--16483	22	3.2	20	66	18	50	47	5	2	43	1.42
32934--32965	2	16.0	2	100	0	64	50	0	0	50	1.00
32964--32994	10	3.1	10	90	0	53	61	6	0	32	1.21
34284--34329	20	2.3	20	92	0	74	45	21	10	21	1.82
34480--34530	22	2.3	22	96	0	93	15	45	21	17	1.86
34874--34948	20	3.8	20	85	0	105	13	14	21	50	1.77
34918--34955	20	1.9	20	88	0	58	18	13	21	47	1.82
36442--36582	42	3.4	42	88	0	201	26	32	19	20	1.97
36832--36880	21	2.3	21	96	0	89	30	12	18	38	1.87
37172--37269	21	4.7	21	92	5	162	20	37	18	23	1.94
38420--38483	31	2.1	31	100	0	128	31	6	15	46	1.71
38793--38853	20	3.0	20	85	0	77	16	18	19	45	1.85
42036--42097	22	3.0	22	90	9	96	27	29	22	20	1.99
43059--43117	28	2.1	28	96	0	109	32	25	3	38	1.72
48040--48084	22	2.0	22	95	0	81	26	35	20	17	1.95
48662--48723	18	3.0	21	77	18	76	30	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53203--53369	84	2.0	85	83	3	212	31	16	18	32	1.94
53348--53395	13	3.7	13	91	0	78	33	14	20	31	1.93
53341--53395	26	2.1	26	89	0	83	36	12	20	30	1.90
54817--54870	24	2.2	24	90	0	81	44	20	12	22	1.85
54833--54884	24	2.2	24	82	0	59	38	21	15	25	1.92
54996--55029	12	2.8	12	90	0	50	14	0	29	55	1.40
55672--55713	20	2.1	20	86	0	57	30	7	30	30	1.84
62216--62260	23	2.0	22	82	4	54	15	15	17	51	1.77
69307--69371	33	2.0	33	82	11	80	44	1	12	41	1.51
74090--74135	21	2.2	21	96	0	83	30	26	8	34	1.86

Tables:   1

The End!