genome.fa.s7391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007391.1 Hibiscus syriacus cultivar Beakdansim tig00019905_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119655

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7199--7259	31	2.0	31	84	9	81	31	9	24	34	1.88
13828--13897	31	2.3	29	83	9	79	44	10	15	30	1.79
16118--16166	25	2.0	25	91	0	80	22	28	22	26	1.99
16161--16213	24	2.2	24	86	6	72	26	16	18	37	1.93
19096--19128	16	1.9	18	88	11	52	54	3	0	42	1.15
19105--19194	29	3.0	29	79	9	85	37	16	4	41	1.69
26512--26576	29	2.2	30	83	2	78	35	23	6	35	1.80
29898--29937	20	2.0	20	85	0	53	55	25	12	7	1.63
30234--30269	14	2.6	14	90	0	54	55	8	13	22	1.65
30237--30279	14	2.8	15	82	13	52	53	9	13	23	1.69
30762--30791	16	1.9	15	93	6	51	30	0	33	36	1.58
30967--31010	19	2.4	18	85	11	54	45	0	0	54	0.99
32231--32263	2	16.5	2	100	0	66	48	0	0	51	1.00
32476--32518	13	3.2	14	83	9	54	13	4	4	76	1.10
32485--32519	14	2.6	13	90	4	52	11	5	5	77	1.12
36374--36413	21	1.9	21	84	0	53	45	5	30	20	1.72
38338--38381	19	2.4	18	85	11	54	45	0	0	54	0.99
39417--39459	19	2.3	19	92	4	70	25	0	2	72	0.97
39455--39497	2	21.5	2	95	0	77	48	2	0	48	1.14
39590--39616	2	13.5	2	100	0	54	48	0	0	51	1.00
39565--39642	16	5.1	15	75	12	52	35	1	0	62	1.03
39558--39667	11	10.2	10	73	16	53	33	3	0	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39612--39721	37	3.0	35	79	13	107	27	7	0	64	1.26
43780--43805	3	8.7	3	100	0	52	65	0	34	0	0.93
44832--44881	11	4.5	11	87	5	73	48	8	2	42	1.44
44748--44918	95	1.8	93	85	7	238	45	4	4	46	1.43
44723--44912	2	95.0	2	69	19	103	45	3	4	47	1.38
44723--44992	134	2.0	130	79	12	284	44	4	5	45	1.44
45270--45313	18	2.4	18	80	0	52	2	45	0	52	1.13
45350--45405	21	2.7	21	100	0	112	17	19	14	48	1.81
45389--45588	101	2.0	102	84	5	262	34	27	6	32	1.81
45778--46017	53	4.5	52	74	3	176	25	28	4	41	1.74
45811--46013	106	1.9	106	80	2	237	25	28	4	42	1.74
46001--46123	52	2.3	52	84	6	149	21	30	3	43	1.69
49510--49542	14	2.4	14	94	0	57	57	9	6	27	1.53
49761--49828	16	4.2	16	84	0	73	38	14	23	23	1.92
51824--52100	132	2.1	132	97	0	527	33	12	16	36	1.88
55159--55184	2	13.0	2	100	0	52	50	0	0	50	1.00
68550--68795	124	2.0	124	96	4	453	41	18	16	23	1.90
69551--69629	41	1.9	41	84	7	106	20	17	25	36	1.94
70006--70149	53	2.7	53	89	1	218	31	20	25	21	1.98
75117--75184	30	2.3	30	84	5	84	42	4	14	38	1.66
75694--75731	13	3.0	13	80	7	51	18	50	13	18	1.78
77075--77205	2	65.0	2	86	10	169	46	3	2	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79061--79140	32	2.5	32	80	8	83	40	13	13	32	1.84
79072--79237	32	5.4	32	73	9	103	36	15	16	30	1.91
87715--87763	22	2.2	22	82	13	57	12	6	6	75	1.17
88059--88109	16	3.3	16	84	10	54	11	9	7	70	1.33
88072--88111	16	2.5	17	88	8	57	7	15	7	70	1.33
88310--88343	17	2.1	17	88	5	52	14	0	2	82	0.79
89553--89586	11	3.1	11	86	0	50	52	29	8	8	1.62
89600--89739	23	6.2	23	91	3	203	40	18	17	23	1.91
89616--89697	11	7.4	11	67	8	58	41	21	17	19	1.90
89648--89689	12	3.6	12	74	6	50	35	23	19	21	1.96
95404--95455	26	2.0	26	100	0	104	34	3	11	50	1.57
95407--95463	26	2.2	26	93	0	96	36	3	8	50	1.50
95414--95472	26	2.3	26	84	0	73	37	3	10	49	1.54
98556--98600	18	2.5	19	82	10	58	40	15	11	33	1.83
99830--99872	21	2.0	21	95	0	77	27	27	18	25	1.98
100560--100640	31	2.6	31	92	0	126	40	22	18	18	1.91
104786--104814	3	9.7	3	100	0	58	0	34	0	65	0.93
111765--111808	20	2.2	20	88	8	63	0	6	11	81	0.86
113139--113205	26	2.6	26	92	0	107	44	10	20	23	1.82
113193--113384	20	8.7	20	73	18	150	42	12	24	20	1.86
113167--113364	46	4.3	46	92	0	324	43	12	23	20	1.86
113259--113344	26	3.5	26	75	18	112	45	13	22	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113167--113396	92	2.5	89	86	5	241	43	12	23	20	1.85
119463--119633	91	1.9	92	84	9	233	39	12	20	27	1.89

Tables:   1

The End!