Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007393.1 Hibiscus syriacus cultivar Beakdansim tig00019914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 57535
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Found at i:1061 original size:17 final size:17
Alignment explanation
Indices: 1041--1073 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1031 GAAAGTCAAC
*
1041 GGTCAACGGTCGGGTCG
1 GGTCAACAGTCGGGTCG
1058 GGTCAACAGTCGGGTC
1 GGTCAACAGTCGGGTC
1074 AGGTAGTCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.24, G:0.42, T:0.18
Consensus pattern (17 bp):
GGTCAACAGTCGGGTCG
Found at i:1116 original size:19 final size:19
Alignment explanation
Indices: 1089--1137 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
1079 GTCGGGTCGA
*
1089 GTCAGACCGGTCC-AGACCG
1 GTCAAACCGGTCCGA-ACCG
*
1108 GTCAAACCGGTTCGAACCG
1 GTCAAACCGGTCCGAACCG
1127 GTCAAACCGGT
1 GTCAAACCGGT
1138 TCAAAACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 26 0.96
20 1 0.04
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.14
Consensus pattern (19 bp):
GTCAAACCGGTCCGAACCG
Found at i:1118 original size:9 final size:9
Alignment explanation
Indices: 1089--1155 Score: 62
Period size: 9 Copynumber: 7.0 Consensus size: 9
1079 GTCGGGTCGA
*
1089 GTCAGACCG
1 GTCAAACCG
*
1098 GTCCAGACCG
1 GT-CAAACCG
1108 GTCAAACCG
1 GTCAAACCG
*
1117 GTTCGAACCG
1 G-TCAAACCG
1127 GTCAAACCG
1 GTCAAACCG
*
1136 GTTCAAAACTG
1 G-TC-AAACCG
1147 GTCAAACCG
1 GTCAAACCG
1156 ATTTTCCAGC
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
9 22 0.45
10 21 0.43
11 6 0.12
ACGTcount: A:0.28, C:0.31, G:0.25, T:0.15
Consensus pattern (9 bp):
GTCAAACCG
Found at i:1138 original size:19 final size:20
Alignment explanation
Indices: 1104--1155 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1094 ACCGGTCCAG
*
1104 ACCGGTCAAACCGGTTC-GA
1 ACCGGTCAAACCGGTTCAAA
1123 ACCGGTCAAACCGGTTCAAA
1 ACCGGTCAAACCGGTTCAAA
*
1143 ACTGGTCAAACCG
1 ACCGGTCAAACCG
1156 ATTTTCCAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.31, C:0.31, G:0.23, T:0.15
Consensus pattern (20 bp):
ACCGGTCAAACCGGTTCAAA
Found at i:7370 original size:32 final size:31
Alignment explanation
Indices: 7334--7410 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
7324 CGGGGCCGTG
*
7334 GGGCCTACCTAAGAACACATCTTAGGGCCGCA
1 GGGCCTACCTAAGAA-ACATCTCAGGGCCGCA
** **
7366 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAAACATCTCAGGGCCGCA
*
7397 GAGCCTACCTAAGA
1 GGGCCTACCTAAGA
7411 GTCACATTAA
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
31 24 0.65
32 13 0.35
ACGTcount: A:0.27, C:0.31, G:0.27, T:0.14
Consensus pattern (31 bp):
GGGCCTACCTAAGAAACATCTCAGGGCCGCA
Found at i:7393 original size:63 final size:63
Alignment explanation
Indices: 7287--7410 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 63
7277 CCCTAAGGGA
* * * ** *
7287 ACATCTTAGGGCATGAGAGCCTACCCAAGATAGATTTCGGGGCCGTGGGGCCTACCTAAGAAC
1 ACATCTTAGGGCACGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
* *
7350 ACATCTTAGGGC-CGCAGGGCCTACCCGAGA-ATGATCTCAGGGCCGCAGAGCCTACCTAAGA
1 ACATCTTAGGGCACG-AGAGCCTACCCAAGATA-GATCTCAGGGCCGCAGAGCCTACCTAAGA
7411 GTCACATTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
62 2 0.04
63 49 0.96
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.17
Consensus pattern (63 bp):
ACATCTTAGGGCACGAGAGCCTACCCAAGATAGATCTCAGGGCCGCAGAGCCTACCTAAGAAC
Found at i:8277 original size:7 final size:7
Alignment explanation
Indices: 8265--8302 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
8255 GTCAAAGAAA
8265 GTCAACG
1 GTCAACG
8272 GTCAACG
1 GTCAACG
*
8279 GTCAATG
1 GTCAACG
8286 GTCAACG
1 GTCAACG
8293 GTCAACG
1 GTCAACG
8300 GTC
1 GTC
8303 GGGTCAACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:11426 original size:65 final size:65
Alignment explanation
Indices: 11264--11419 Score: 244
Period size: 65 Copynumber: 2.4 Consensus size: 65
11254 TAATTGAATT
* *
11264 TCGAATGCATTTAGTGCACTGATGCACAAGCCATGCATCGATGCACCCCTGAATATTTTGAAACA
1 TCGAATGCATTTAGTGCACCGATGCACAAGACATGCATCGATGCACCCCTGAATATTTTGAAACA
**
11329 TCGAATGCATTTAGTGCACCGATGCACAAGACATGCATCGATGCA-CCCTGGTTATTTTGAAACA
1 TCGAATGCATTTAGTGCACCGATGCACAAGACATGCATCGATGCACCCCTGAATATTTTGAAACA
*
11393 TCGAA-GCATATTTGTGCACCGATGCAC
1 TCGAATGCAT-TTAGTGCACCGATGCAC
11420 TTAGACAACC
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
63 4 0.05
64 38 0.45
65 43 0.51
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (65 bp):
TCGAATGCATTTAGTGCACCGATGCACAAGACATGCATCGATGCACCCCTGAATATTTTGAAACA
Found at i:12615 original size:48 final size:47
Alignment explanation
Indices: 12554--12657 Score: 172
Period size: 48 Copynumber: 2.2 Consensus size: 47
12544 CTTGTAATAA
* *
12554 AAATATTAGATTTATAATAAAATTAATAGAAAACAATTAAAACAAATG
1 AAATAATATATTTATAATAAAATTAATAGAAAACAATTAAAA-AAATG
*
12602 AAATAATATATTTATAATAAAATTAATAGAAAATAATTAAAAAAATG
1 AAATAATATATTTATAATAAAATTAATAGAAAACAATTAAAAAAATG
12649 AAATAATAT
1 AAATAATAT
12658 TAGATTTGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 14 0.26
48 39 0.74
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (47 bp):
AAATAATATATTTATAATAAAATTAATAGAAAACAATTAAAAAAATG
Found at i:18313 original size:21 final size:20
Alignment explanation
Indices: 18246--18384 Score: 73
Period size: 21 Copynumber: 6.8 Consensus size: 20
18236 AAATGACCAA
***
18246 CAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
18266 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
18286 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
18307 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
18328 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* * *
18348 CCAGAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
18369 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
18385 ACACATAAAT
Statistics
Matches: 88, Mismatches: 26, Indels: 10
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.01
20 41 0.47
21 46 0.52
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:18413 original size:20 final size:20
Alignment explanation
Indices: 18352--18560 Score: 222
Period size: 20 Copynumber: 10.4 Consensus size: 20
18342 GATTTTCCAG
** *
18352 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGTA
*
18372 AATCGCAACGCGAA-CACATA
1 AATCGCAACGCGAATC-CGTA
* *
18392 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
18412 AATAGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
18432 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
*
18452 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATCCGTA
**
18472 AATCGCAACGATAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
18492 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
**
18512 AATCGCAACGATAATCCGTA
1 AATCGCAACGCGAATCCGTA
* *
18532 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGAATCCGTA
*
18552 AATCACAAC
1 AATCGCAAC
18561 ACTGAAATTT
Statistics
Matches: 165, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 164 0.99
21 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGTA
Found at i:19607 original size:19 final size:19
Alignment explanation
Indices: 19538--19694 Score: 199
Period size: 19 Copynumber: 8.7 Consensus size: 19
19528 GCAACGAGAG
19538 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
19557 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
19571 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
19591 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
19610 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
19629 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
19643 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
19663 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
19682 AATCGCATTGCGA
1 AATCGCAATGCGA
19695 TTCTCTCGTT
Statistics
Matches: 121, Mismatches: 5, Indels: 24
0.81 0.03 0.16
Matches are distributed among these distances:
14 22 0.18
15 1 0.01
16 2 0.02
17 4 0.03
19 63 0.52
20 29 0.24
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:19631 original size:72 final size:72
Alignment explanation
Indices: 19538--19694 Score: 271
Period size: 72 Copynumber: 2.2 Consensus size: 72
19528 GCAACGAGAG
19538 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCCCAACGA-GAAAATCGCAATGCGGAAATGAAAATCGCAATGC
19602 GAAATGAA
65 GAAATGAA
* *
19610 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
19675 AAATGAA
66 AAATGAA
*
19682 AATCGCATTGCGA
1 AATCGCAATGCGA
19695 TTCTCTCGTT
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
72 80 0.99
73 1 0.01
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (72 bp):
AATCGCAATGCGAAATGAAAATCCCAACGAGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
AAATGAA
Found at i:19659 original size:53 final size:52
Alignment explanation
Indices: 19524--19688 Score: 214
Period size: 53 Copynumber: 3.1 Consensus size: 52
19514 CGGAAATTAC
*
19524 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
19571 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
19629 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
19682 AATCGCA
1 AATCGCA
19689 TTGCGATTCT
Statistics
Matches: 103, Mismatches: 3, Indels: 18
0.83 0.02 0.15
Matches are distributed among these distances:
47 8 0.08
49 1 0.01
50 1 0.01
52 14 0.14
53 63 0.61
55 2 0.02
56 1 0.01
58 13 0.13
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:19728 original size:53 final size:52
Alignment explanation
Indices: 19665--19780 Score: 151
Period size: 53 Copynumber: 2.2 Consensus size: 52
19655 GAAATGAAAA
*
19665 TCGCAATGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
** ** ** *
19717 TCCGCATTGCGATTTTCATTTCGCATTGTGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
19770 TCGCATTGCGA
1 TCGCATTGCGA
19781 TTTTCATTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 11 0.20
53 44 0.80
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (52 bp):
TCGCATTGCGAAATGAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:19795 original size:53 final size:53
Alignment explanation
Indices: 19684--19801 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
19674 GAAATGAAAA
19684 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
*
19737 TCGCATTGTGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
19789 TCCGCATTGCGAT
1 T-CGCATTGCGAT
19802 AGTCATTTTT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
52 19 0.31
53 43 0.69
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.45
Consensus pattern (53 bp):
TCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:19809 original size:20 final size:19
Alignment explanation
Indices: 19703--19801 Score: 127
Period size: 20 Copynumber: 5.4 Consensus size: 19
19693 GATTCTCTCG
19703 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
19723 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
* *
19742 TTGTGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
19756 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
19775 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
19795 TTGCGAT
1 TTGCGAT
19802 AGTCATTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
14 5 0.07
16 7 0.10
17 7 0.10
19 24 0.35
20 26 0.38
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:19927 original size:14 final size:14
Alignment explanation
Indices: 19908--19944 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
19898 CATCAATTAC
19908 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
19922 ACAAATCATCTTTT
1 ACAAATCAACTTTT
19936 ACAAATCAA
1 ACAAATCAA
19945 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:20233 original size:20 final size:20
Alignment explanation
Indices: 20208--20313 Score: 124
Period size: 20 Copynumber: 5.3 Consensus size: 20
20198 TCATTTTGCA
20208 GCGATTTACGGATACGCGTT
1 GCGATTTACGGATACGCGTT
*
20228 GCGATTTACGGATACACGTT
1 GCGATTTACGGATACGCGTT
*
20248 GCGATTTACAGATACGCGTT
1 GCGATTTACGGATACGCGTT
* *
20268 GCGATTTATGTG-TTCGCGTT
1 GCGATTTACG-GATACGCGTT
* ** *
20288 GCGATTTTCATATTCGCGTT
1 GCGATTTACGGATACGCGTT
20308 GCGATT
1 GCGATT
20314 CTGGAAAATC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
20 73 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36
Consensus pattern (20 bp):
GCGATTTACGGATACGCGTT
Found at i:31245 original size:65 final size:65
Alignment explanation
Indices: 31171--31295 Score: 241
Period size: 65 Copynumber: 1.9 Consensus size: 65
31161 GCTTATCAGC
31171 TTATGTTAGTTTGTAGCATAACTGCTTTCTGTTATAGATGTTATAGTTGTTAAACGGTTATCAAT
1 TTATGTTAGTTTGTAGCATAACTGCTTTCTGTTATAGATGTTATAGTTGTTAAACGGTTATCAAT
*
31236 TTATGTTAGTTTGTAGCATAACTGCTTTCTGTTATAGCTGTTATAGTTGTTAAACGGTTA
1 TTATGTTAGTTTGTAGCATAACTGCTTTCTGTTATAGATGTTATAGTTGTTAAACGGTTA
31296 CCACTTCATG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (65 bp):
TTATGTTAGTTTGTAGCATAACTGCTTTCTGTTATAGATGTTATAGTTGTTAAACGGTTATCAAT
Found at i:34208 original size:64 final size:63
Alignment explanation
Indices: 34122--34282 Score: 200
Period size: 64 Copynumber: 2.5 Consensus size: 63
34112 ATTATTTAAG
* * *
34122 ATGCATCGATGCACATGCAGTGCATCGATGCAT-GAATTTAAATAGAAAACATCGAATAGGA-TT
1 ATGCATCGATGCACAAGCAGTGCATCGATGCATCCAA-TTAAATA-AAAACATCGAAT-GCATTT
34185 T
63 T
* * *
34186 ATGCATCGATGCATAAGGAGTGCATCGATGCATCCCCATTAAATAAAAACATCGAATGCATTTT
1 ATGCATCGATGCACAAGCAGTGCATCGATGCAT-CCAATTAAATAAAAACATCGAATGCATTTT
* *
34250 ATGCACCGATGCACAAGTAGTGCATCGATGCAT
1 ATGCATCGATGCACAAGCAGTGCATCGATGCAT
34283 ACATTCATTG
Statistics
Matches: 85, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
63 2 0.02
64 75 0.88
65 7 0.08
66 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (63 bp):
ATGCATCGATGCACAAGCAGTGCATCGATGCATCCAATTAAATAAAAACATCGAATGCATTTT
Found at i:34992 original size:30 final size:30
Alignment explanation
Indices: 34956--35019 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
34946 AAGGAACATA
* *
34956 TGGATAGTTGCCGAGGATCTTTATGACCTC
1 TGGATAGTTACCGAGGATCTTTATAACCTC
* * *
34986 TGGATAGTTACCGGGGTTCTTTGTAACCTC
1 TGGATAGTTACCGAGGATCTTTATAACCTC
35016 TGGA
1 TGGA
35020 CAGGTCCTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (30 bp):
TGGATAGTTACCGAGGATCTTTATAACCTC
Found at i:54378 original size:7 final size:7
Alignment explanation
Indices: 54368--54405 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
54358 CTCGGGGCTC
54368 GGGTCTG
1 GGGTCTG
54375 GGGTCTG
1 GGGTCTG
54382 GGGTCTG
1 GGGTCTG
*
54389 GGGCCTG
1 GGGTCTG
*
54396 GGGCCTG
1 GGGTCTG
54403 GGG
1 GGG
54406 CCTTAGGGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.00, C:0.18, G:0.61, T:0.21
Consensus pattern (7 bp):
GGGTCTG
Found at i:54406 original size:7 final size:7
Alignment explanation
Indices: 54372--54452 Score: 92
Period size: 7 Copynumber: 11.4 Consensus size: 7
54362 GGGCTCGGGT
*
54372 CTGGGGT
1 CTGGGGC
*
54379 CTGGGGT
1 CTGGGGC
54386 CTGGGGC
1 CTGGGGC
54393 CTGGGGC
1 CTGGGGC
54400 CTGGGGC
1 CTGGGGC
*
54407 CTTAGGGC
1 C-TGGGGC
*
54415 CTTAGGGC
1 C-TGGGGC
54423 CTGGGGC
1 CTGGGGC
54430 CTGGGGC
1 CTGGGGC
54437 CTGGGG-
1 CTGGGGC
*
54443 CTCGGGC
1 CTGGGGC
54450 CTG
1 CTG
54453 AGGGTTTCGG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
6 5 0.07
7 48 0.72
8 14 0.21
ACGTcount: A:0.02, C:0.26, G:0.52, T:0.20
Consensus pattern (7 bp):
CTGGGGC
Found at i:54471 original size:7 final size:7
Alignment explanation
Indices: 54459--54825 Score: 646
Period size: 7 Copynumber: 53.9 Consensus size: 7
54449 CCTGAGGGTT
54459 TCGGGGC
1 TCGGGGC
54466 TCGGGGC
1 TCGGGGC
54473 TCGGGGC
1 TCGGGGC
54480 TCGGGGC
1 TCGGGGC
54487 TCGGGGC
1 TCGGGGC
54494 TCGGGGC
1 TCGGGGC
54501 TCGGGGC
1 TCGGGGC
54508 TCGGGGC
1 TCGGGGC
54515 TCGGGGC
1 TCGGGGC
54522 TCGGGGC
1 TCGGGGC
54529 TCGGGGC
1 TCGGGGC
54536 TCGGGGC
1 TCGGGGC
54543 TCGGGGC
1 TCGGGGC
54550 TCGGGGC
1 TCGGGGC
54557 TCGGGGC
1 TCGGGGC
54564 TCGGGGC
1 TCGGGGC
54571 TCGGGGC
1 TCGGGGC
54578 TCGGGGC
1 TCGGGGC
54585 TC-GGGC
1 TCGGGGC
54591 TCGGGGC
1 TCGGGGC
54598 TCGGGGC
1 TCGGGGC
54605 TCGGGGC
1 TCGGGGC
54612 TCGGGGC
1 TCGGGGC
54619 TC-GGGC
1 TCGGGGC
54625 TCGGGGC
1 TCGGGGC
54632 TCGGGGC
1 TCGGGGC
54639 TCGGGGC
1 TCGGGGC
54646 TC-GGGC
1 TCGGGGC
54652 TCGGGGC
1 TCGGGGC
54659 TCGGGGC
1 TCGGGGC
54666 TCGGGGC
1 TCGGGGC
54673 TCGGGGC
1 TCGGGGC
54680 TC-GGGC
1 TCGGGGC
54686 TCGGGGC
1 TCGGGGC
54693 TCGGGGC
1 TCGGGGC
54700 TCGGGGC
1 TCGGGGC
54707 TCGGGGC
1 TCGGGGC
54714 TCGGGGC
1 TCGGGGC
54721 TC-GGGC
1 TCGGGGC
54727 TCGGGGC
1 TCGGGGC
54734 TC-GGGC
1 TCGGGGC
54740 TCGGGGC
1 TCGGGGC
54747 TC-GGGC
1 TCGGGGC
54753 TC-GGGC
1 TCGGGGC
54759 TCGGGGC
1 TCGGGGC
54766 TCGGGGC
1 TCGGGGC
54773 TC-GGGC
1 TCGGGGC
54779 TCGGGGC
1 TCGGGGC
54786 TCGGGGC
1 TCGGGGC
54793 TC-GGGC
1 TCGGGGC
54799 TCGGGGC
1 TCGGGGC
*
54806 TCGGGGT
1 TCGGGGC
*
54813 TCGGGGT
1 TCGGGGC
54820 TCGGGG
1 TCGGGG
54826 GGTTCGGGTT
Statistics
Matches: 350, Mismatches: 1, Indels: 18
0.95 0.00 0.05
Matches are distributed among these distances:
6 60 0.17
7 290 0.83
ACGTcount: A:0.00, C:0.29, G:0.56, T:0.15
Consensus pattern (7 bp):
TCGGGGC
Found at i:54841 original size:7 final size:7
Alignment explanation
Indices: 54831--57526 Score: 2909
Period size: 7 Copynumber: 402.6 Consensus size: 7
54821 CGGGGGGTTC
54831 GGGTTTA
1 GGGTTTA
54838 GGGTTTA
1 GGGTTTA
54845 GGGTTTA
1 GGGTTTA
54852 GGGTTTA
1 GGGTTTA
54859 GGGTTTA
1 GGGTTTA
54866 GGGTTTA
1 GGGTTTA
54873 GGGTTTA
1 GGGTTTA
54880 GGG-TTA
1 GGGTTTA
54886 -GGTTTA
1 GGGTTTA
54892 GGGTTTA
1 GGGTTTA
54899 GGGTTTA
1 GGGTTTA
54906 GGGTTTA
1 GGGTTTA
54913 GGGTTTA
1 GGGTTTA
54920 GGGTTTA
1 GGGTTTA
54927 GGGTTTA
1 GGGTTTA
54934 GGGTTTA
1 GGGTTTA
54941 GGGTTTA
1 GGGTTTA
54948 GGGTTTA
1 GGGTTTA
54955 GGGTTTA
1 GGGTTTA
54962 GGGTTTA
1 GGGTTTA
54969 GGGTTTA
1 GGGTTTA
54976 GGGTTTA
1 GGGTTTA
54983 -GG-TTA
1 GGGTTTA
54988 GGGTTTA
1 GGGTTTA
54995 GGG-TTA
1 GGGTTTA
55001 GGGTTTA
1 GGGTTTA
55008 GGGTTTA
1 GGGTTTA
55015 -GGTTTA
1 GGGTTTA
55021 GGGTTTA
1 GGGTTTA
55028 GGGTTTA
1 GGGTTTA
55035 -GGTTTA
1 GGGTTTA
55041 GGGTTTA
1 GGGTTTA
55048 GGGTTTA
1 GGGTTTA
55055 GGGTTTA
1 GGGTTTA
55062 GGGTTTA
1 GGGTTTA
55069 GGGTTTA
1 GGGTTTA
55076 -GG-TTA
1 GGGTTTA
55081 GGGTTTA
1 GGGTTTA
55088 GGGTTTA
1 GGGTTTA
55095 GGG-TTA
1 GGGTTTA
55101 GGGTTT-
1 GGGTTTA
55107 GGGTTTA
1 GGGTTTA
55114 GGG-TTA
1 GGGTTTA
55120 GGGTTTA
1 GGGTTTA
55127 GGGTTTA
1 GGGTTTA
55134 GGGTTTA
1 GGGTTTA
55141 GGGTTTA
1 GGGTTTA
55148 GGGTTTA
1 GGGTTTA
55155 GGG-TTA
1 GGGTTTA
55161 GGG-TTA
1 GGGTTTA
55167 GGGTTTA
1 GGGTTTA
55174 GGGTTTA
1 GGGTTTA
55181 GGG-TTA
1 GGGTTTA
55187 GGG-TTA
1 GGGTTTA
55193 GGGTTTA
1 GGGTTTA
*
55200 GGGTTTC
1 GGGTTTA
55207 GGGTTTA
1 GGGTTTA
55214 GGGTTTA
1 GGGTTTA
55221 GGGGGTTTA
1 --GGGTTTA
55230 GGGTTTA
1 GGGTTTA
55237 GGGTTTA
1 GGGTTTA
55244 GGG-TT-
1 GGGTTTA
55249 GGGTTTA
1 GGGTTTA
55256 GGGTTT-
1 GGGTTTA
55262 GGGTTTA
1 GGGTTTA
55269 GGGTTTA
1 GGGTTTA
55276 GGGTTTA
1 GGGTTTA
55283 GGG-TTA
1 GGGTTTA
55289 GGGTTTA
1 GGGTTTA
55296 GGG-TTA
1 GGGTTTA
55302 GGGTTTA
1 GGGTTTA
55309 GGG-TTA
1 GGGTTTA
55315 GGG-TTA
1 GGGTTTA
55321 GGGTTTA
1 GGGTTTA
55328 GGG-TTA
1 GGGTTTA
55334 GGGTTTA
1 GGGTTTA
55341 -GGTTTA
1 GGGTTTA
55347 -GGTGTTA
1 GGGT-TTA
55354 GGGTTTA
1 GGGTTTA
55361 GGG-TTA
1 GGGTTTA
55367 -GGTTTA
1 GGGTTTA
55373 GGG-TTA
1 GGGTTTA
55379 GGGTTTA
1 GGGTTTA
55386 GGGTTTA
1 GGGTTTA
55393 GGG-TTA
1 GGGTTTA
55399 GGGTTTA
1 GGGTTTA
55406 GGGTTTTTA
1 GGG--TTTA
55415 GGGTTT-
1 GGGTTTA
55421 GGGTTTA
1 GGGTTTA
55428 GGGTTTA
1 GGGTTTA
55435 GGG--T-
1 GGGTTTA
*
55439 GGGTTTCGG
1 GGGTTT--A
55448 GGGTTTA
1 GGGTTTA
55455 -GGTTTA
1 GGGTTTA
55461 GGGTTTA
1 GGGTTTA
55468 GGGTTTTTA
1 GGG--TTTA
55477 GGGTTTA
1 GGGTTTA
*
55484 -GGTTTC
1 GGGTTTA
*
55490 GGG-TTC
1 GGGTTTA
55496 GGGTTT-
1 GGGTTTA
*
55502 GGGTTTT
1 GGGTTTA
55509 GGGTTTA
1 GGGTTTA
55516 GGG-TTA
1 GGGTTTA
55522 GGGTTTA
1 GGGTTTA
55529 GGGTTTA
1 GGGTTTA
**
55536 GGGTTCGG
1 GGGTT-TA
*
55544 GGGTTTC
1 GGGTTTA
55551 GGGTTTA
1 GGGTTTA
*
55558 GGGTTTC
1 GGGTTTA
55565 GGGTTTA
1 GGGTTTA
55572 GGGTTT-
1 GGGTTTA
55578 GGGTTTA
1 GGGTTTA
55585 GGGTTTA
1 GGGTTTA
55592 GGGTTT-
1 GGGTTTA
*
55598 GGGTGGTTC
1 GGGT--TTA
55607 GGGTTTA
1 GGGTTTA
55614 GGGTTTA
1 GGGTTTA
55621 GGGTTTTTA
1 GGG--TTTA
55630 GGGTTTA
1 GGGTTTA
55637 GGGTTTA
1 GGGTTTA
*
55644 GGGTTTC
1 GGGTTTA
*
55651 GGGTTTCG
1 GGGTTT-A
55659 GTAGGTTTA
1 G--GGTTTA
55668 GGGGGTTTA
1 --GGGTTTA
55677 GGG-TT-
1 GGGTTTA
*
55682 GGGTTTC
1 GGGTTTA
55689 GGGTTT-
1 GGGTTTA
*
55695 CGGTTTA
1 GGGTTTA
55702 GGGTTTA
1 GGGTTTA
55709 GGGTTTA
1 GGGTTTA
55716 GGGTTTA
1 GGGTTTA
55723 GGGTTTA
1 GGGTTTA
55730 GGG-TT-
1 GGGTTTA
55735 GGG-TTA
1 GGGTTTA
*
55741 GGG-TTC
1 GGGTTTA
55747 GGG-TTA
1 GGGTTTA
55753 -GGTTTA
1 GGGTTTA
*
55759 GGGTTTC
1 GGGTTTA
55766 GGG-TTA
1 GGGTTTA
*
55772 GGGTTTC
1 GGGTTTA
*
55779 GGGTTTC
1 GGGTTTA
55786 GGG-TTA
1 GGGTTTA
*
55792 GGGTTTC
1 GGGTTTA
55799 GGG--TA
1 GGGTTTA
55804 -GGTTT-
1 GGGTTTA
*
55809 CGGTTT-
1 GGGTTTA
55815 GGG-TTA
1 GGGTTTA
*
55821 GGGTTTC
1 GGGTTTA
*
55828 GGG-TTC
1 GGGTTTA
*
55834 GGGGTTA
1 GGGTTTA
*
55841 GGGTTTC
1 GGGTTTA
55848 GGGTTTA
1 GGGTTTA
55855 GGG-TT-
1 GGGTTTA
*
55860 CGG-TTA
1 GGGTTTA
55866 GGGTTT-
1 GGGTTTA
55872 GGTGTTTA
1 GG-GTTTA
55880 GGGTTTA
1 GGGTTTA
*
55887 GGGTTTC
1 GGGTTTA
55894 GGG-TT-
1 GGGTTTA
55899 -GGTTTA
1 GGGTTTA
55905 GGGTTTA
1 GGGTTTA
*
55912 GGG-TTC
1 GGGTTTA
55918 GGGTTT-
1 GGGTTTA
55924 GGGTTTA
1 GGGTTTA
55931 GGGTTTA
1 GGGTTTA
*
55938 GGGTTTC
1 GGGTTTA
55945 GGGTTT-
1 GGGTTTA
55951 GGGTTTA
1 GGGTTTA
55958 GGGTTT-
1 GGGTTTA
* *
55964 CGGTTTC
1 GGGTTTA
*
55971 GGGTTTC
1 GGGTTTA
55978 GGGTTT-
1 GGGTTTA
*
55984 CGGTTTA
1 GGGTTTA
55991 GGGTTTA
1 GGGTTTA
*
55998 GGGTTTC
1 GGGTTTA
*
56005 GGGTTTC
1 GGGTTTA
56012 GGGTTTA
1 GGGTTTA
56019 GGGTTTA
1 GGGTTTA
56026 GGGTTTA
1 GGGTTTA
56033 GGG-TTA
1 GGGTTTA
56039 GGGGGTTT-
1 --GGGTTTA
*
56047 GGGTTTC
1 GGGTTTA
56054 GGG-TTA
1 GGGTTTA
56060 GGGTTTA
1 GGGTTTA
56067 GGGTTTA
1 GGGTTTA
56074 -GGTTTA
1 GGGTTTA
*
56080 GGGTTTC
1 GGGTTTA
*
56087 GGGTTTC
1 GGGTTTA
*
56094 GGGTTTC
1 GGGTTTA
56101 GGGTTTA
1 GGGTTTA
56108 GGGTTTA
1 GGGTTTA
*
56115 GGGTTTC
1 GGGTTTA
* *
56122 GGGGTTC
1 GGGTTTA
56129 GGGTTTA
1 GGGTTTA
56136 GGG-TT-
1 GGGTTTA
* **
56141 GGGGTGG
1 GGGTTTA
56148 GGGTTTA
1 GGGTTTA
56155 GGGTTTA
1 GGGTTTA
*
56162 GGGTTTC
1 GGGTTTA
56169 GGG-TTA
1 GGGTTTA
56175 GGGTTTA
1 GGGTTTA
56182 GGGTTTA
1 GGGTTTA
56189 GGGTTT-
1 GGGTTTA
56195 -GGTTTA
1 GGGTTTA
56201 -GGTTTA
1 GGGTTTA
56207 GGGTTTA
1 GGGTTTA
56214 GGGTTTA
1 GGGTTTA
*
56221 GGGTTTC
1 GGGTTTA
56228 GGG-TTA
1 GGGTTTA
*
56234 GGG-TTC
1 GGGTTTA
56240 GGGTTTA
1 GGGTTTA
56247 GGG-TTA
1 GGGTTTA
*
56253 GGGTTTC
1 GGGTTTA
56260 GGGTTTA
1 GGGTTTA
56267 GGGTTTA
1 GGGTTTA
56274 GGGTTTA
1 GGGTTTA
56281 GGG-TTA
1 GGGTTTA
56287 GGGTTTA
1 GGGTTTA
56294 GGGTTTA
1 GGGTTTA
*
56301 GGGTTTCGG
1 GGGTTT--A
56310 GGGTTTA
1 GGGTTTA
*
56317 -GGTTTC
1 GGGTTTA
56323 GGGTTT-
1 GGGTTTA
56329 GGG-TTA
1 GGGTTTA
56335 GGG-TTA
1 GGGTTTA
56341 GGGTTTA
1 GGGTTTA
56348 GGGTTTA
1 GGGTTTA
*
56355 -GGTTTC
1 GGGTTTA
56361 GGGTTTA
1 GGGTTTA
56368 GGG-TTA
1 GGGTTTA
56374 GGGTTTA
1 GGGTTTA
*
56381 GGGTTTC
1 GGGTTTA
56388 GGGTTTA
1 GGGTTTA
56395 GGGTTT-
1 GGGTTTA
* *
56401 CGGTTTC
1 GGGTTTA
*
56408 GGG-TTC
1 GGGTTTA
56414 GGGTTTA
1 GGGTTTA
56421 -GGTTTA
1 GGGTTTA
56427 -GG-TTA
1 GGGTTTA
56432 GGGTTT-
1 GGGTTTA
*
56438 CGGTTT-
1 GGGTTTA
*
56444 GGGTTTTC
1 GGG-TTTA
*
56452 GGGTTTC
1 GGGTTTA
*
56459 GGGTTTC
1 GGGTTTA
*
56466 GGGTTTC
1 GGGTTTA
56473 GGGTTTTA
1 GGG-TTTA
56481 GGGTTTA
1 GGGTTTA
*
56488 GGG-TTC
1 GGGTTTA
56494 GGGTTTA
1 GGGTTTA
56501 -GGTTTA
1 GGGTTTA
56507 GGG--T-
1 GGGTTTA
56511 GGGTTTA
1 GGGTTTA
56518 GGGTTTA
1 GGGTTTA
56525 -GGTTTA
1 GGGTTTA
56531 --GTTTA
1 GGGTTTA
56536 GGGTTTA
1 GGGTTTA
56543 GGGTTTA
1 GGGTTTA
56550 GGGTTTA
1 GGGTTTA
56557 GGGTTTA
1 GGGTTTA
56564 GGG-TT-
1 GGGTTTA
56569 GGG-TTA
1 GGGTTTA
56575 -GGTTTA
1 GGGTTTA
56581 GGGTTTA
1 GGGTTTA
56588 GGGTTTA
1 GGGTTTA
56595 GGGTTTA
1 GGGTTTA
*
56602 GGGGGTTA
1 -GGGTTTA
56610 -GGTTTA
1 GGGTTTA
56616 GGGTTTA
1 GGGTTTA
56623 --GTTTA
1 GGGTTTA
56628 -GG-TTA
1 GGGTTTA
56633 GGG-TT-
1 GGGTTTA
*
56638 -GGTTTC
1 GGGTTTA
56644 GGGTTTA
1 GGGTTTA
56651 GGG-TTA
1 GGGTTTA
*
56657 GGGTTTC
1 GGGTTTA
56664 GGGTTTTA
1 GGG-TTTA
56672 GGGTTTA
1 GGGTTTA
*
56679 GGG-TTC
1 GGGTTTA
56685 GGGTTTA
1 GGGTTTA
*
56692 GGG-TTC
1 GGGTTTA
56698 GGGTTTA
1 GGGTTTA
56705 GGGTTTA
1 GGGTTTA
56712 GGGTTTA
1 GGGTTTA
56719 GGG-TT-
1 GGGTTTA
56724 GGGTTTA
1 GGGTTTA
56731 GGGTTTA
1 GGGTTTA
56738 GGGTTTTTTA
1 GGG---TTTA
56748 GGGTTTA
1 GGGTTTA
56755 GGGTTTA
1 GGGTTTA
56762 GGG-TTA
1 GGGTTTA
56768 GGGTTTA
1 GGGTTTA
56775 GGGTTTA
1 GGGTTTA
56782 GGGGTTT-
1 -GGGTTTA
56789 GGGTTTA
1 GGGTTTA
56796 GGGTTTA
1 GGGTTTA
56803 GGG-TTA
1 GGGTTTA
56809 GGGTTT-
1 GGGTTTA
56815 -GGTTTA
1 GGGTTTA
*
56821 GGGTTTC
1 GGGTTTA
*
56828 GGGTTTC
1 GGGTTTA
56835 GGG-TTA
1 GGGTTTA
56841 GGGTTTA
1 GGGTTTA
56848 GGGTTTTA
1 GGG-TTTA
56856 GGGTTTA
1 GGGTTTA
56863 GGGTTTA
1 GGGTTTA
*
56870 GGGTTTC
1 GGGTTTA
56877 GGGTTTA
1 GGGTTTA
56884 GGG-TT-
1 GGGTTTA
*
56889 GGGTGTA
1 GGGTTTA
56896 GGGTTTA
1 GGGTTTA
56903 GGG-TT-
1 GGGTTTA
* *
56908 CGGTTTCG
1 GGGTTT-A
56916 GGGTTT-
1 GGGTTTA
* *
56922 CGGTTTC
1 GGGTTTA
56929 GGGTTTA
1 GGGTTTA
56936 GGGTTTA
1 GGGTTTA
**
56943 GGG-GGA
1 GGGTTTA
56949 GGG-TTA
1 GGGTTTA
*
56955 GGGTTTC
1 GGGTTTA
*
56962 GGGTTTTTCG
1 GGG--TTT-A
56972 GGGTTTA
1 GGGTTTA
56979 GGGTTTA
1 GGGTTTA
*
56986 GGGTTTTC
1 GGG-TTTA
56994 GGGTTT-
1 GGGTTTA
57000 GGGTTTA
1 GGGTTTA
57007 GGGTTTA
1 GGGTTTA
*
57014 GGG-TTC
1 GGGTTTA
57020 GGG-TT-
1 GGGTTTA
57025 GGGTTTA
1 GGGTTTA
57032 GGGTTTA
1 GGGTTTA
57039 GGGTTTA
1 GGGTTTA
*
57046 -GGTTTC
1 GGGTTTA
57052 GGGTTTTTA
1 GGG--TTTA
57061 GGGTTTA
1 GGGTTTA
*
57068 GGGTTTC
1 GGGTTTA
57075 GGG-TTA
1 GGGTTTA
57081 GGGTTTA
1 GGGTTTA
57088 GGG-TTA
1 GGGTTTA
57094 GGGTTTA
1 GGGTTTA
57101 GGG-TTA
1 GGGTTTA
57107 GGGTTTA
1 GGGTTTA
* *
57114 GGGGGGGTTG
1 ---GGGTTTA
57124 GGGTTTA
1 GGGTTTA
57131 -GG-TTA
1 GGGTTTA
57136 -GGTTTA
1 GGGTTTA
*
57142 GGG--TG
1 GGGTTTA
57147 GGGTTTA
1 GGGTTTA
57154 GGGTTTA
1 GGGTTTA
57161 GGGTTTA
1 GGGTTTA
57168 GGGTTTA
1 GGGTTTA
*
57175 GGGTTTC
1 GGGTTTA
57182 GGGTTTA
1 GGGTTTA
*
57189 GGGTTTC
1 GGGTTTA
57196 GGG-TTA
1 GGGTTTA
57202 GGG-TTA
1 GGGTTTA
57208 GGG-TTA
1 GGGTTTA
57214 -GGTTTA
1 GGGTTTA
*
57220 GGGTTTC
1 GGGTTTA
57227 GGGTTTA
1 GGGTTTA
57234 GGG-TTA
1 GGGTTTA
57240 GGGTTTA
1 GGGTTTA
57247 GGGTTTA
1 GGGTTTA
57254 GGGTTTA
1 GGGTTTA
*
57261 GGGTTTC
1 GGGTTTA
*
57268 GGTTTTA
1 GGGTTTA
*
57275 GGG-TTG
1 GGGTTTA
57281 GGGTTTA
1 GGGTTTA
57288 GGGTTTA
1 GGGTTTA
57295 GGGTTTA
1 GGGTTTA
*
57302 GGGTTTC
1 GGGTTTA
57309 GGGTTTA
1 GGGTTTA
57316 GGGTTTA
1 GGGTTTA
57323 GGGTTTA
1 GGGTTTA
57330 GGGTTTA
1 GGGTTTA
57337 GGGTTTA
1 GGGTTTA
*
57344 GGG-TTC
1 GGGTTTA
57350 GGGTTTA
1 GGGTTTA
57357 GGGTTTA
1 GGGTTTA
*
57364 GGTTTTA
1 GGGTTTA
*
57371 GGGTTTC
1 GGGTTTA
57378 GGG-TTA
1 GGGTTTA
*
57384 GGGTTTC
1 GGGTTTA
57391 GGGTTTA
1 GGGTTTA
57398 GGGTTTA
1 GGGTTTA
57405 GGG-TT-
1 GGGTTTA
57410 GGG-TT-
1 GGGTTTA
57415 GGGTTTA
1 GGGTTTA
57422 GGGTTTA
1 GGGTTTA
57429 GGGTTTA
1 GGGTTTA
57436 GGGGGTTTA
1 --GGGTTTA
57445 -GGTTTA
1 GGGTTTA
57451 GGGTTTA
1 GGGTTTA
57458 GGGTTTA
1 GGGTTTA
57465 GGG-TT-
1 GGGTTTA
*
57470 GGG-TTC
1 GGGTTTA
57476 GGGTTTA
1 GGGTTTA
57483 GGGTTTA
1 GGGTTTA
57490 GGG-TTA
1 GGGTTTA
*
57496 GGG-TTC
1 GGGTTTA
*
57502 GGGTTTC
1 GGGTTTA
*
57509 GGGTTTC
1 GGGTTTA
*
57516 GGGTTTC
1 GGGTTTA
57523 GGGT
1 GGGT
57527 GTTCGGGTT
Statistics
Matches: 2364, Mismatches: 140, Indels: 370
0.82 0.05 0.13
Matches are distributed among these distances:
4 12 0.01
5 109 0.05
6 587 0.25
7 1503 0.64
8 64 0.03
9 68 0.03
10 20 0.01
11 1 0.00
ACGTcount: A:0.10, C:0.03, G:0.45, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Done.