genome.fa.s7396.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007396.1 Hibiscus syriacus cultivar Beakdansim tig00019948_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148627

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2194--2300	25	4.3	25	79	4	99	42	25	14	17	1.88
2194--2301	50	2.2	50	78	6	130	42	25	14	17	1.87
5824--5853	13	2.3	13	94	0	51	36	3	0	60	1.14
6475--6515	21	2.0	21	95	0	73	41	0	17	41	1.49
12748--12772	9	2.8	9	100	0	50	48	52	0	0	1.00
17320--17346	7	3.9	7	100	0	54	25	14	14	44	1.84
19685--19718	18	1.9	18	88	5	52	26	29	26	17	1.98
23150--23190	7	5.9	7	94	5	66	26	0	0	73	0.84
24877--24927	20	2.5	21	83	6	68	21	7	7	62	1.48
27691--27776	32	2.8	31	86	6	113	30	4	6	58	1.45
27873--27940	28	2.5	28	80	7	68	29	2	13	54	1.53
27693--27958	143	1.8	148	80	6	328	27	7	8	56	1.56
34235--34281	23	2.0	23	100	0	94	48	17	8	25	1.74
35369--35423	29	1.9	28	92	3	92	34	20	9	36	1.84
35364--35429	29	2.3	28	81	5	87	28	27	10	33	1.90
39056--39162	41	2.6	41	87	0	160	20	17	25	36	1.94
39081--39153	20	3.6	20	72	3	65	12	20	27	39	1.88
44230--44339	40	2.9	34	67	22	85	39	2	8	50	1.47
44541--44613	38	1.9	38	100	0	146	49	5	1	43	1.34
50037--50075	7	5.6	7	100	0	78	12	12	28	46	1.79
50037--50082	21	2.2	21	92	0	74	13	10	30	45	1.77
50037--50089	21	2.5	21	87	0	61	13	9	32	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52658--52721	19	3.2	20	72	14	53	43	1	1	53	1.19
52667--52716	20	2.5	20	78	12	59	40	2	2	56	1.22
52634--52720	31	2.8	30	79	10	95	41	1	3	54	1.25
55906--55987	34	2.5	34	90	4	123	13	19	24	42	1.87
55918--55984	20	3.7	19	69	22	63	11	19	25	43	1.85
55957--56066	41	2.7	41	87	2	150	20	16	21	40	1.91
56783--56830	12	3.8	12	89	10	78	39	27	25	8	1.84
56779--56831	26	2.0	26	100	0	106	37	26	22	13	1.91
74306--74343	14	2.7	15	80	12	53	5	26	2	65	1.27
78371--78439	30	2.3	30	90	5	104	37	7	11	43	1.69
78514--78587	29	2.5	29	82	4	85	37	14	9	37	1.79
79006--80937	8	239.2	8	90	3	2028	41	24	7	26	1.80
82675--82838	80	2.0	80	95	0	292	25	22	14	38	1.91
83298--83363	24	2.8	24	100	0	132	22	7	19	50	1.73
84728--84853	60	2.1	61	83	5	159	33	14	17	34	1.90
85596--85641	20	2.2	21	88	11	69	15	4	13	67	1.38
86731--86776	21	2.2	20	88	3	74	28	17	26	28	1.98
86798--86962	41	4.0	41	90	3	235	19	18	23	38	1.93
86796--86914	21	5.8	21	74	4	107	22	16	23	36	1.94
86823--86934	20	5.5	20	77	4	116	16	20	23	39	1.92
87047--87073	6	4.5	6	100	0	54	33	51	14	0	1.43
92845--92902	2	29.0	2	100	0	116	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93693--93722	15	2.0	15	93	0	51	43	13	16	26	1.85
96495--96524	2	15.0	2	100	0	60	50	0	0	50	1.00
97205--98281	490	2.2	492	94	2	1910	36	16	16	29	1.92
99931--103304	496	6.8	496	96	0	5871	36	16	17	29	1.92
105347--105409	23	3.0	20	76	15	72	52	15	6	25	1.66
105504--105557	29	1.9	27	92	3	81	53	11	12	22	1.70
105909--105956	24	2.0	24	100	0	96	33	8	29	29	1.86
106237--106314	41	1.9	41	94	0	138	32	15	11	41	1.83
107258--107928	333	2.0	335	93	1	1143	33	16	20	29	1.95
113563--113723	26	6.3	26	66	24	92	49	1	3	46	1.25
117276--117317	5	8.6	5	80	15	52	76	2	2	19	1.01
117276--117317	9	4.3	10	80	14	52	76	2	2	19	1.01
117340--117454	34	3.5	33	81	9	119	41	3	3	51	1.36
117334--117802	37	12.8	36	76	11	350	44	6	4	45	1.49
117447--117731	73	3.9	74	80	7	240	44	5	5	44	1.50
117750--117828	38	2.2	35	84	6	95	44	8	1	45	1.43
118211--118265	25	2.2	25	84	15	69	45	1	10	41	1.50
118564--118635	32	2.3	30	83	9	90	52	1	11	34	1.45
127363--129218	492	3.8	493	90	4	2966	36	16	17	29	1.92
130579--130660	41	2.0	41	90	9	132	31	17	12	39	1.86
131607--132261	332	2.0	322	90	3	1033	33	16	20	29	1.95
135295--135322	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137714--137769	21	2.6	22	78	13	64	50	0	3	46	1.19
139723--139796	32	2.4	30	82	8	85	52	2	8	36	1.45
142645--142673	11	2.5	12	94	5	51	37	0	6	55	1.27
143971--144127	39	4.0	38	75	4	152	19	27	23	29	1.98
144392--144442	25	2.0	26	85	11	70	27	3	13	54	1.56

Tables:   1

The End!