genome.fa.s740.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000740.1 Hibiscus syriacus cultivar Beakdansim tig00001430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111648

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2608--2663	29	1.9	29	89	7	87	35	10	10	42	1.74
9901--9984	24	3.5	24	83	3	116	28	15	19	36	1.92
14609--14695	24	3.7	24	89	3	140	27	16	19	36	1.93
14599--14699	24	4.2	24	83	7	125	28	13	18	38	1.90
23039--23067	2	14.5	2	100	0	58	51	0	0	48	1.00
27491--28716	408	3.0	408	99	0	2402	34	18	15	31	1.92
41146--41230	32	2.6	33	83	10	113	51	5	3	38	1.43
44833--44915	42	2.0	42	92	4	141	30	18	20	31	1.96
45635--45682	14	3.5	13	77	11	51	35	22	18	22	1.96
45626--45686	28	2.2	28	96	0	113	34	22	18	24	1.96
52413--52473	25	2.5	24	76	7	59	68	0	4	26	1.09
53779--53847	3	22.3	3	80	11	77	66	1	1	30	1.09
53782--53845	10	6.1	10	79	16	76	67	1	1	29	1.09
53888--53984	36	2.5	37	80	8	88	52	2	1	44	1.19
53883--54059	38	4.6	38	77	12	150	45	4	2	46	1.38
53852--54059	77	2.7	75	79	9	185	47	5	2	44	1.40
54010--54113	53	1.9	54	84	9	142	40	6	4	48	1.51
53971--54174	90	2.3	88	80	13	213	43	7	4	45	1.52
54858--55470	329	1.9	328	88	1	922	25	20	24	30	1.99
54858--55470	165	3.7	165	90	0	908	25	20	24	30	1.99
58821--58865	19	2.4	19	92	3	74	66	8	13	11	1.44
65795--65870	38	2.0	38	84	0	98	31	10	9	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69162--69212	19	2.6	20	90	3	77	43	23	17	15	1.88
69162--69439	20	13.6	20	76	6	155	39	20	22	17	1.92
69306--69429	63	2.0	63	90	0	194	35	18	27	18	1.94
69266--69439	83	2.1	83	89	0	258	35	18	25	19	1.95
69426--69469	20	2.2	20	91	0	70	54	15	18	11	1.70
69547--69715	6	28.5	6	99	0	324	32	50	16	0	1.45
70403--70478	6	13.5	6	98	1	117	0	17	53	28	1.43
70567--70865	20	14.6	20	74	10	167	19	19	21	39	1.93
70788--70870	21	4.0	21	73	6	78	25	16	24	33	1.96
75934--76008	30	2.5	30	73	4	80	25	18	17	38	1.92
76311--76360	2	25.0	2	100	0	100	50	0	0	50	1.00
81570--81637	29	2.3	28	87	5	82	42	16	4	36	1.68
83563--84107	282	1.9	283	85	4	758	20	23	19	36	1.95
86129--86468	84	4.0	83	85	6	400	23	35	10	31	1.88
88675--88745	35	2.0	35	100	0	142	43	16	2	36	1.63
89641--89671	16	1.9	16	100	0	62	45	12	6	35	1.68
93361--93398	19	2.0	19	100	0	76	31	21	15	31	1.94
96482--96611	51	2.5	50	82	4	127	13	34	28	23	1.93
96573--96650	41	2.0	40	85	10	106	15	35	28	20	1.93
96669--96708	17	2.4	17	95	0	71	27	22	25	25	2.00
99753--99819	23	2.9	23	67	22	59	62	4	5	26	1.38
111296--111326	15	2.1	15	93	0	53	58	25	12	3	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111395--111452	14	3.9	15	82	8	66	56	24	10	8	1.60

Tables:   1

The End!