Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007400.1 Hibiscus syriacus cultivar Beakdansim tig00019973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65005

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5234--5318
42
2.0
42
95
0
152
34
23
22
20
1.97
7850--7899
24
2.1
24
92
0
82
52
0
6
42
1.26
7855--7907
8
6.6
8
87
8
72
49
0
9
41
1.35
8369--8481
50
2.3
50
84
1
147
38
9
20
30
1.85
8419--8466
20
2.4
20
85
0
60
37
4
22
35
1.74
14814--14856
20
2.2
20
91
0
68
18
4
20
55
1.60
17414--17457
15
2.9
15
83
13
54
52
0
2
45
1.13
17475--17747
2
141.5
2
66
19
73
42
2
9
45
1.51
17478--17521
11
4.0
11
78
21
56
43
2
0
54
1.12
17556--17747
37
5.2
37
73
12
130
39
3
10
45
1.57
17568--17708
57
2.4
57
84
9
169
37
3
11
47
1.57
18498--18530
15
2.2
15
100
0
66
39
12
30
18
1.87
18634--18658
13
1.9
13
100
0
50
12
16
0
72
1.13
20312--20340
12
2.4
12
100
0
58
37
6
37
17
1.76
24682--24712
15
2.0
15
93
6
53
48
6
0
45
1.28
24897--24942
24
1.9
24
81
0
56
47
15
15
21
1.81
26393--26425
13
2.5
13
100
0
66
15
24
12
48
1.78
29324--29352
3
9.7
3
100
0
58
68
31
0
0
0.89
29351--29389
3
13.0
3
100
0
78
66
0
0
33
0.92
32774--32850
31
2.4
32
76
6
86
20
27
25
25
1.99
37460--37544
42
2.0
42
95
0
152
34
23
22
20
1.97
39574--39633
9
6.6
9
75
17
52
58
3
5
33
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39552--39606
23
2.5
22
82
5
65
56
1
5
36
1.33
39552--39656
31
3.5
31
75
16
89
54
1
5
38
1.35
39555--39663
39
2.8
37
78
12
112
53
1
7
37
1.40
40521--40559
20
2.0
20
100
0
78
43
15
10
30
1.80
45486--45528
20
2.2
20
91
0
68
18
4
20
55
1.60
45879--45907
13
2.1
14
93
6
51
41
6
6
44
1.58
48077--48119
8
6.0
7
82
12
52
53
0
2
44
1.13
48121--48169
2
24.5
2
95
0
89
51
46
2
0
1.12
48169--48235
2
34.5
2
85
11
95
46
1
1
50
1.19
48252--48295
16
2.8
16
85
0
61
56
2
4
36
1.32
48170--48368
37
5.3
37
68
22
76
44
2
7
45
1.45
48342--48412
17
4.6
16
68
22
53
38
4
9
47
1.56
48338--48464
10
12.0
10
67
18
62
37
3
12
46
1.60
49221--49253
15
2.2
15
100
0
66
39
12
30
18
1.87
49355--49382
13
2.2
13
100
0
56
7
14
0
78
0.95
51034--51086
12
4.4
12
90
0
88
41
5
33
18
1.74
55429--55459
15
2.0
15
93
6
53
48
6
0
45
1.28
55643--55688
24
1.9
24
81
0
56
47
15
15
21
1.81
56049--56081
13
2.5
13
100
0
66
15
24
12
48
1.78
57911--57937
3
9.0
3
100
0
54
66
0
0
33
0.92
61860--61935
31
2.4
31
77
2
80
15
26
30
27
1.96

Tables:   1

The End!