genome.fa.s7401.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007401.1 Hibiscus syriacus cultivar Beakdansim tig00019974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65583

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291--1358	23	3.0	23	75	0	73	16	23	25	35	1.95
1653--1704	20	2.5	20	73	11	52	55	1	17	25	1.52
3768--3867	42	2.4	42	86	1	130	26	10	18	46	1.80
6569--6610	2	21.0	2	100	0	84	50	0	0	50	1.00
6812--6861	18	2.6	19	84	9	75	22	12	36	30	1.90
11416--11633	44	5.0	44	89	0	301	33	21	21	23	1.98
12388--12460	23	3.4	23	66	24	68	17	17	43	20	1.88
12387--12473	41	2.1	41	95	0	156	17	18	43	20	1.88
17965--18040	38	2.0	38	100	0	152	39	23	2	34	1.69
20583--20608	13	2.0	13	100	0	52	38	7	0	53	1.30
20688--20724	2	18.5	2	100	0	74	48	0	0	51	1.00
21436--21461	2	13.0	2	100	0	52	50	0	0	50	1.00
24061--24137	3	25.7	3	97	0	145	33	1	0	64	1.01
24578--24610	13	2.4	14	85	15	50	63	15	21	0	1.30
24581--24616	12	2.8	13	91	8	56	61	16	22	0	1.35
24586--24646	19	3.3	19	79	6	63	63	11	24	0	1.27
24595--24655	19	3.3	19	75	9	63	70	9	19	0	1.15
24608--24653	24	1.9	24	81	0	56	73	6	19	0	1.04
26293--26341	18	2.8	18	78	9	57	24	0	2	73	0.94
26332--26368	15	2.7	15	88	12	53	24	5	8	62	1.44
36965--37037	13	5.5	13	76	15	78	79	0	17	2	0.85
36955--37037	27	3.1	26	77	16	89	78	0	19	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36963--37032	38	1.9	35	86	11	97	80	0	17	2	0.84
37369--37410	19	2.2	20	91	4	68	30	4	11	52	1.59
38182--38429	83	3.0	83	92	1	426	29	13	21	35	1.91
39265--39903	113	5.6	113	94	1	1012	38	12	18	29	1.89
40225--40319	3	31.7	3	100	0	190	33	0	0	66	0.92
40767--40804	12	2.9	13	92	7	60	60	15	23	0	1.35
40774--40834	19	3.3	19	79	6	63	63	11	24	0	1.27
40783--40843	19	3.3	19	75	9	63	70	9	19	0	1.15
40796--40841	24	1.9	24	81	0	56	73	6	19	0	1.04
43858--44224	181	2.0	180	92	0	608	37	20	16	25	1.93
50307--50339	16	2.1	16	94	0	57	33	27	6	33	1.81
55964--56060	39	2.5	39	91	3	153	47	10	12	29	1.74
56014--56045	16	2.1	15	94	5	55	50	6	6	37	1.53
56730--56766	5	7.4	5	100	0	74	37	0	0	62	0.96
62251--62323	22	3.3	22	98	0	137	34	8	21	35	1.84

Tables:   1

The End!