genome.fa.s7403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007403.1 Hibiscus syriacus cultivar Beakdansim tig00019996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68220

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571--748	60	3.0	60	91	3	281	35	14	15	34	1.88
931--965	18	2.0	18	94	5	63	45	11	22	20	1.82
2962--3015	21	2.6	21	87	0	72	18	7	42	31	1.78
2968--3017	21	2.4	21	89	0	73	18	6	44	32	1.74
4553--4601	25	2.0	25	92	4	82	44	14	22	18	1.85
4659--4692	11	3.1	11	86	0	50	35	0	2	61	1.11
4847--4883	15	2.4	16	90	4	58	37	0	2	59	1.12
4928--5004	2	39.0	2	97	2	147	49	0	0	50	1.00
11691--11730	14	2.9	14	88	0	53	25	15	32	27	1.95
14200--14237	19	2.0	19	89	0	58	47	0	0	52	1.00
14210--14264	22	2.6	22	81	13	55	49	1	0	49	1.11
17468--18215	138	5.4	139	89	1	1108	21	18	23	35	1.96
17469--18215	277	2.7	276	90	1	1120	21	18	23	35	1.96
18646--18687	19	2.2	19	83	8	50	42	4	4	47	1.45
18668--18711	12	3.7	12	81	0	52	36	2	9	52	1.46
20073--20230	21	7.8	20	72	7	86	38	25	17	18	1.92
20197--20390	20	9.6	20	81	5	221	35	25	19	19	1.95
20197--20390	60	3.2	60	83	0	253	35	25	19	19	1.95
20771--20841	33	2.2	33	89	0	106	11	23	16	47	1.79
20921--20995	20	3.8	20	80	5	89	41	20	25	13	1.88
20935--21026	19	5.1	19	74	14	77	42	20	26	10	1.85
20979--21035	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20933--21051	33	3.4	33	86	6	148	43	22	23	10	1.83
21047--21144	19	5.7	19	70	22	81	10	24	22	42	1.84
21069--21158	14	5.7	14	74	23	81	8	25	23	42	1.83
21052--21166	33	3.5	33	95	0	212	9	24	20	45	1.81
22860--23424	93	6.1	93	98	0	1107	22	12	19	46	1.83
23468--23596	19	7.3	19	75	17	125	45	28	17	8	1.77
23504--23596	33	2.8	32	91	4	150	46	27	18	7	1.76
23468--23596	52	2.5	52	74	14	140	45	28	17	8	1.77
23592--23709	19	6.8	18	73	19	108	8	19	25	46	1.78
23614--23670	14	3.7	14	72	20	51	7	19	28	45	1.76
23597--23725	33	3.8	33	85	5	159	9	17	26	46	1.78
25652--25687	14	2.6	14	95	0	63	33	0	22	44	1.53
25793--25892	19	5.5	19	82	12	129	46	18	21	15	1.84
25793--25909	53	2.2	52	92	1	189	44	17	23	14	1.86
25899--26031	19	7.5	19	76	16	142	15	23	18	43	1.87
25899--26031	71	1.9	72	93	1	232	15	23	18	43	1.87
25905--26031	52	2.4	49	83	13	141	14	22	18	44	1.85
26092--26189	19	5.4	19	83	13	134	46	17	21	14	1.83
26092--26208	53	2.2	53	96	1	218	45	17	23	13	1.84
28524--28548	12	2.1	12	100	0	50	0	28	0	72	0.86
29452--29701	20	12.5	20	84	1	232	20	18	23	38	1.94
29688--29770	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29668--29766	42	2.4	43	77	11	100	21	18	23	37	1.94
30992--31043	11	4.5	11	75	13	50	61	0	0	38	0.96
31025--31084	15	3.8	15	74	18	50	56	0	0	43	0.99
31308--31451	60	2.4	61	83	5	177	20	36	26	16	1.93
40690--40748	20	2.8	20	87	10	73	23	22	23	30	1.99
48680--48727	2	24.0	2	100	0	96	50	0	0	50	1.00
48804--48861	20	2.6	22	89	10	84	25	22	22	29	1.99
52709--52752	2	22.0	2	100	0	88	50	0	0	50	1.00
56887--56944	20	2.7	20	86	10	71	24	22	24	29	1.99
63343--63413	31	2.3	31	92	0	115	30	22	7	39	1.81
63402--63435	16	2.1	16	94	0	59	29	8	23	38	1.85
63513--63577	31	2.1	31	85	0	85	27	26	10	35	1.90

Tables:   1

The End!