genome.fa.s7404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007404.1 Hibiscus syriacus cultivar Beakdansim tig00020006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64739

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7923--8118	5	38.4	5	95	4	356	59	0	0	40	0.97
9920--9967	23	2.1	23	88	0	69	35	12	18	33	1.89
10343--10396	23	2.5	20	75	18	54	42	18	1	37	1.61
10358--10420	23	2.7	23	90	0	90	38	19	6	36	1.77
12973--13633	184	3.6	184	98	0	1261	34	16	14	34	1.89
15006--15056	3	17.0	3	83	0	66	25	33	3	37	1.74
15006--15068	12	5.2	12	90	0	81	23	33	6	36	1.80
15010--15071	18	3.4	18	88	0	88	20	33	6	38	1.79
15010--15071	6	10.3	6	83	0	61	20	33	6	38	1.79
16534--18675	198	10.8	199	94	1	3781	32	14	15	37	1.88
16534--18675	397	5.4	396	97	1	4012	32	14	15	37	1.88
16534--18675	793	2.7	791	97	1	4053	32	14	15	37	1.88
18736--18815	38	2.1	38	83	2	99	55	10	2	32	1.47
18752--18815	19	3.4	19	95	0	110	56	9	3	31	1.47
20610--20675	33	2.0	33	87	0	96	24	45	1	28	1.62
22781--22833	24	2.2	24	83	6	63	26	7	13	52	1.66
22978--23024	20	2.4	19	79	10	58	19	17	8	55	1.67
23145--23191	20	2.3	20	89	10	78	17	17	10	55	1.69
28339--28368	15	2.0	15	93	0	51	13	23	20	43	1.86
34781--34836	25	2.3	23	88	8	85	41	0	12	46	1.42
42796--43234	230	1.9	223	84	5	585	37	16	15	30	1.90
42875--44469	558	2.9	558	88	0	2341	36	15	16	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43966--44465	223	2.2	225	85	3	675	36	16	17	29	1.92
50455--50492	13	2.9	13	88	11	60	52	0	13	34	1.40
50455--50497	12	3.1	14	80	16	54	55	2	11	30	1.48
51209--51246	20	1.9	20	88	0	58	21	26	10	42	1.85
53040--53081	2	21.0	2	100	0	84	50	0	50	0	1.00
58269--58336	23	2.9	24	72	16	70	44	1	1	52	1.19
59480--59521	18	2.4	17	84	15	50	54	2	2	40	1.26
61382--61421	19	2.0	20	90	4	64	20	15	0	65	1.28
61378--61424	19	2.6	18	83	12	60	19	14	0	65	1.26

Tables:   1

The End!