genome.fa.s7405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007405.1 Hibiscus syriacus cultivar Beakdansim tig00020009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96709

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5662--5761	47	2.1	47	92	1	166	30	23	24	23	1.99
10043--10084	18	2.3	19	84	8	52	33	45	0	21	1.52
11055--11088	10	3.5	10	84	8	52	67	0	0	32	0.91
14617--14661	23	1.9	24	82	13	58	35	4	0	60	1.17
17244--17269	5	5.2	5	100	0	52	0	19	57	23	1.40
18225--18253	2	14.5	2	100	0	58	51	0	0	48	1.00
21867--21956	41	2.2	41	97	0	171	30	27	16	25	1.97
21950--22113	42	3.9	42	92	1	267	35	24	18	21	1.95
22013--22170	63	2.5	61	81	11	167	37	24	17	20	1.94
21938--22146	84	2.5	81	82	6	265	35	24	17	22	1.95
21950--22168	84	2.6	82	82	7	219	36	24	18	21	1.95
22061--22184	63	2.0	63	86	0	176	38	22	17	20	1.93
22180--22232	21	2.5	21	93	0	88	16	20	32	30	1.95
28233--28334	51	2.0	51	100	0	204	45	23	7	23	1.79
34570--34600	7	4.4	7	100	0	62	25	29	29	16	1.96
34597--34654	5	10.8	5	78	14	62	6	22	51	18	1.70
34590--34654	22	3.0	22	100	0	130	9	23	49	18	1.76
34651--34729	19	4.2	18	78	16	88	27	29	29	13	1.95
34676--34750	29	2.5	31	89	8	120	29	26	26	17	1.97
34651--34749	9	10.3	9	80	10	90	29	27	28	15	1.96
41905--41942	7	5.4	7	100	0	76	26	28	28	15	1.96
41939--41996	5	10.8	5	78	14	62	6	22	51	18	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41932--41996	22	3.0	22	100	0	130	9	23	49	18	1.76
41993--42071	19	4.2	18	78	16	88	27	29	29	13	1.95
42018--42092	29	2.5	31	89	8	120	29	26	26	17	1.97
41993--42091	9	10.3	9	80	10	90	29	27	28	15	1.96
60892--60998	42	2.6	41	81	1	124	25	23	22	28	1.99
60775--61176	214	1.9	214	91	0	660	34	15	18	32	1.92
61200--61224	13	1.9	13	100	0	50	32	24	20	24	1.98
61212--61275	20	3.1	20	70	16	67	25	21	23	29	1.99
61212--61296	42	2.0	42	93	0	143	25	18	23	31	1.97
61341--61432	42	2.2	41	84	7	116	22	17	23	35	1.95
61213--61431	122	1.8	120	87	4	323	26	18	22	31	1.97
61799--62006	53	3.9	53	89	3	296	32	22	25	20	1.98
64635--64717	3	27.0	3	75	18	73	66	0	1	32	1.00
64636--64717	34	2.3	34	81	6	92	67	0	1	31	0.99
64635--64718	43	2.0	43	85	4	116	66	0	1	32	0.99
65046--65483	123	3.6	124	94	1	729	24	19	14	40	1.90
66077--66137	19	3.4	18	72	21	56	31	11	21	36	1.89
66421--66471	22	2.3	22	89	0	75	31	13	17	37	1.89
72654--72730	31	2.5	31	82	2	100	28	31	25	14	1.95
72607--72730	63	2.0	63	82	6	153	26	29	27	16	1.97
73613--73650	17	2.2	17	100	0	76	10	23	47	18	1.79
73652--73735	19	4.4	19	85	8	100	27	30	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73647--73705	9	6.3	9	76	7	55	25	32	28	13	1.94
73698--73756	20	2.9	21	83	14	79	30	23	27	18	1.98
79997--80073	31	2.5	31	82	2	100	28	31	25	14	1.95
79950--80073	63	2.0	63	82	6	153	26	29	27	16	1.97
80956--80993	17	2.2	17	100	0	76	10	23	47	18	1.79
80995--81108	19	5.9	19	81	11	106	29	28	25	15	1.96
81003--81107	29	3.6	29	81	8	115	31	28	24	15	1.95
80996--81107	9	11.7	9	74	12	89	30	29	25	15	1.95
84912--85003	46	1.9	49	89	6	145	28	20	14	36	1.91
85501--85542	2	22.0	2	85	9	61	52	0	0	47	1.00
86265--86302	14	2.7	14	84	11	51	21	10	28	39	1.86
87887--87928	19	2.2	19	83	8	50	2	21	14	61	1.43
88507--88573	3	22.0	3	79	14	75	67	0	1	31	1.00
95964--96129	84	2.0	83	96	3	309	36	8	16	38	1.79
96285--96464	59	3.1	58	79	5	186	30	15	7	47	1.72

Tables:   1

The End!