genome.fa.s7406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007406.1 Hibiscus syriacus cultivar Beakdansim tig00020010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78682

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433--467	18	1.9	18	88	0	52	54	22	2	20	1.58
524--804	139	2.0	139	96	1	519	28	13	15	43	1.84
777--911	20	6.8	20	93	0	207	30	20	21	27	1.98
950--1027	20	3.9	20	86	0	93	14	16	24	44	1.84
2548--2664	21	5.6	21	75	0	90	24	18	33	23	1.97
2569--2670	42	2.4	42	78	0	114	25	19	32	22	1.97
3145--3186	20	2.1	20	95	0	75	50	23	11	14	1.76
3174--3241	20	3.4	20	88	8	111	32	26	20	20	1.97
3173--3261	40	2.4	36	81	17	103	35	23	20	20	1.95
3289--3364	33	2.3	34	88	2	109	15	19	18	46	1.85
3356--3424	20	3.5	20	84	7	95	18	21	24	34	1.96
5260--5310	20	2.5	20	87	0	66	52	21	11	13	1.72
5298--5375	20	3.9	20	94	0	129	29	23	21	25	1.99
5809--5859	22	2.3	22	93	0	84	19	13	45	21	1.85
6026--6098	20	3.7	20	90	0	119	26	20	27	26	1.99
6085--6132	20	2.3	20	78	3	51	29	18	16	35	1.93
6114--6154	21	2.0	21	85	0	55	39	17	19	24	1.92
6191--6227	19	1.9	19	88	0	56	21	16	27	35	1.94
6541--6651	50	2.2	51	83	6	145	16	32	28	22	1.95
8616--8652	18	2.1	18	100	0	74	32	27	10	29	1.90
10243--10329	35	2.5	34	80	12	97	55	10	8	26	1.61
10550--10623	3	24.7	3	77	0	58	9	35	22	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10548--10623	21	3.6	21	89	0	107	10	35	22	31	1.88
10928--10984	27	2.1	27	83	0	69	26	15	40	17	1.90
10938--10995	27	2.1	27	83	0	71	29	12	34	24	1.91
10991--11025	18	1.9	18	100	0	70	22	20	28	28	1.98
12533--12860	111	3.0	111	93	2	558	45	10	7	36	1.68
24233--24277	21	2.0	23	87	8	67	40	6	2	51	1.41
28615--28674	20	2.9	21	90	7	95	30	25	26	18	1.98
29560--29653	31	3.0	31	90	3	136	20	18	23	38	1.93
30116--30158	21	2.0	21	82	8	52	32	4	13	48	1.63
33339--33378	21	1.9	21	89	0	62	10	25	40	25	1.86
33361--33420	19	2.9	20	85	9	68	16	26	35	21	1.95
42754--42871	30	4.2	30	70	18	110	16	26	31	26	1.96
42751--42852	51	2.0	51	100	0	204	15	27	29	27	1.96
46152--46195	2	22.0	2	100	0	88	50	0	0	50	1.00
46772--46821	26	2.0	25	84	4	64	28	2	6	64	1.28
48524--48578	28	2.0	27	82	3	65	47	5	10	36	1.62
49086--49152	31	2.2	31	97	0	125	23	23	13	38	1.91
50415--50504	19	4.4	19	75	16	90	36	5	27	30	1.80
50968--51063	21	4.6	21	80	7	124	18	17	23	39	1.92
50989--51085	41	2.4	41	92	0	158	19	17	25	37	1.94
51078--51185	41	2.6	41	72	5	110	25	16	19	38	1.92
51098--51147	20	2.5	20	76	3	55	28	18	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60024--60067	21	2.0	21	83	16	54	50	6	15	27	1.70
60145--60474	83	4.0	83	88	4	465	44	12	2	40	1.56
62198--62267	34	2.1	34	86	5	97	41	11	5	41	1.65
62252--62419	58	2.9	57	75	9	160	45	10	6	37	1.65
62249--62467	116	1.9	116	81	10	268	44	10	7	37	1.67
63918--64241	83	4.0	83	85	4	394	44	10	4	40	1.58
66170--66425	133	1.9	130	88	3	388	29	21	16	32	1.95
71449--71814	43	8.6	43	81	3	357	34	20	19	25	1.96
71449--71814	86	4.3	86	83	7	399	34	20	19	25	1.96
73017--73086	31	2.4	30	88	9	101	30	18	8	42	1.80
74756--75146	42	9.4	42	72	7	273	33	17	20	29	1.95
74756--75146	166	2.4	163	81	5	410	33	17	20	29	1.95

Tables:   1

The End!