genome.fa.s7407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007407.1 Hibiscus syriacus cultivar Beakdansim tig00020012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67932

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6186--6271	3	28.0	3	75	17	79	66	0	1	32	1.00
6186--6265	25	3.4	23	81	14	92	65	0	1	33	1.01
6191--6272	43	2.0	40	85	7	110	67	0	1	31	0.99
6601--7156	123	4.6	123	86	6	735	25	19	14	40	1.90
7631--7691	19	3.4	18	72	21	56	31	11	21	36	1.89
7975--8025	22	2.3	22	89	0	75	31	13	17	37	1.89
16681--16772	46	1.9	49	89	6	145	28	20	14	36	1.91
18037--18074	14	2.7	14	84	11	51	21	10	28	39	1.86
20271--20340	3	23.0	3	78	18	74	67	0	1	31	1.00
20271--20350	33	2.5	31	82	11	99	68	1	1	28	1.05
20325--20358	10	3.3	10	91	4	50	79	5	0	14	0.91
28019--28159	58	2.4	59	82	4	169	29	15	7	47	1.72
28286--28452	60	2.8	59	78	6	160	35	4	26	33	1.76
29127--29215	42	2.1	41	85	6	117	22	32	13	31	1.93
34851--34927	31	2.5	31	80	2	91	27	31	27	14	1.95
34804--34927	63	2.0	63	82	6	153	25	29	28	16	1.97
35809--35888	5	14.8	5	77	14	79	7	21	51	20	1.71
35802--35888	22	4.0	22	98	0	165	9	21	49	19	1.76
35885--35983	9	10.3	9	77	10	90	29	28	27	15	1.96
35887--35984	19	5.1	19	80	13	101	29	28	25	16	1.97
35910--35984	29	2.5	31	91	8	129	29	28	26	16	1.96
42215--42291	31	2.5	31	80	2	91	27	31	27	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43174--43264	27	3.2	27	84	14	128	8	21	50	18	1.74
43167--43263	32	3.0	32	93	3	158	9	22	49	18	1.76
43181--43263	5	15.8	5	84	9	103	6	21	53	19	1.67
43260--43339	9	8.3	9	80	10	79	28	27	28	15	1.96
43266--43340	29	2.5	31	91	8	129	29	28	26	16	1.96
43266--43340	19	3.8	20	77	18	77	29	28	26	16	1.96
44169--44257	31	2.9	31	79	1	90	44	5	1	48	1.33
45995--46327	111	3.0	111	95	0	603	36	7	10	45	1.68
54280--54407	60	2.1	60	83	9	154	39	4	23	32	1.75
57827--57915	31	3.0	30	72	8	92	42	14	8	33	1.77
57996--58176	60	3.0	60	79	2	213	32	23	5	38	1.78
64177--64248	20	3.4	21	74	14	67	51	6	1	40	1.37

Tables:   1

The End!