Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007408.1 Hibiscus syriacus cultivar Beakdansim tig00020015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73289

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2358--2409
16
3.2
16
70
24
54
48
26
5
19
1.71
2351--2413
17
3.8
17
74
19
69
47
28
4
19
1.69
3409--3451
21
2.0
21
100
0
86
46
13
0
39
1.44
3416--3704
78
3.7
79
89
7
477
52
15
0
32
1.43
3439--3696
26
10.0
25
66
26
105
51
15
0
32
1.44
3416--3705
153
1.9
153
93
2
503
52
15
0
32
1.43
3607--3783
46
3.9
46
83
11
197
53
11
0
34
1.38
3660--3780
46
2.7
45
93
6
219
52
10
0
37
1.37
3740--3764
13
1.9
13
100
0
50
56
0
0
44
0.99
4673--4775
39
2.7
39
85
5
122
44
0
18
35
1.56
8599--8626
13
2.2
13
100
0
56
32
14
46
7
1.71
19779--19841
23
2.7
23
69
11
56
15
15
12
55
1.69
21210--21304
47
2.0
47
97
0
181
41
13
10
34
1.79
21564--21638
40
1.9
40
86
5
109
53
6
13
26
1.64
30769--30813
21
2.1
21
87
0
63
31
28
24
15
1.96
31687--31842
31
5.0
31
94
1
260
19
18
23
38
1.93
35171--35215
21
2.1
21
87
0
63
31
28
24
15
1.96
36086--36241
31
5.0
31
92
1
251
19
17
23
39
1.93
38467--38567
29
3.4
29
84
5
121
26
3
10
58
1.49
38637--38714
23
3.4
24
80
7
81
29
14
15
41
1.86
39216--39263
21
2.3
21
81
0
60
18
10
8
62
1.52
41521--41643
61
2.0
61
98
0
237
30
17
11
41
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47175--47221
19
2.6
18
83
12
60
65
0
14
19
1.26
49087--49128
18
2.4
17
84
15
50
40
2
2
54
1.26
55511--55551
2
20.5
2
100
0
82
0
48
0
51
1.00
57353--57389
20
1.9
19
89
10
58
45
10
24
18
1.81
58101--58138
13
2.9
13
88
11
60
34
13
0
52
1.40
64095--64621
224
2.4
226
83
5
658
29
16
17
36
1.92
64650--65137
220
2.2
222
81
6
594
30
16
15
37
1.89
64095--65672
553
2.8
556
87
2
2239
31
16
15
36
1.90
65216--65756
230
2.4
220
81
5
595
31
16
15
36
1.90
70239--70281
8
5.5
8
88
5
70
25
25
16
32
1.96
70239--70298
31
1.9
31
82
0
75
28
26
16
28
1.97

Tables:   1

The End!