genome.fa.s7409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007409.1 Hibiscus syriacus cultivar Beakdansim tig00020017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62262

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196--258	27	2.4	26	89	5	99	46	6	22	25	1.75
545--602	27	2.2	27	90	3	91	36	13	20	29	1.91
3098--3177	31	2.6	31	91	0	124	31	35	2	31	1.71
15844--15878	18	1.9	18	88	0	52	34	14	28	22	1.93
17721--17790	24	2.9	24	82	4	61	44	21	11	22	1.84
17798--17853	12	4.6	13	74	14	57	42	14	10	32	1.80
17796--17877	24	3.4	24	86	3	103	40	15	14	29	1.87
21908--21983	24	3.2	24	83	3	73	43	21	13	22	1.86
21925--22040	24	4.8	24	81	6	128	40	18	15	25	1.90
24410--24449	13	3.2	13	89	7	64	17	25	40	17	1.91
24410--24446	12	3.0	12	92	4	56	18	24	40	16	1.90
31860--32468	258	2.4	256	83	5	728	33	15	15	35	1.89
32658--32928	44	6.1	43	77	7	188	25	14	17	42	1.87
33009--33186	89	2.0	89	86	4	252	37	12	6	43	1.69
37761--37796	16	2.3	15	90	4	54	66	0	2	30	1.06
38464--38631	65	2.5	65	85	9	205	54	16	0	27	1.46
40219--40256	16	2.3	17	90	4	60	81	2	2	13	0.90
40225--40272	23	2.1	22	84	3	60	75	6	6	12	1.19
42849--42891	21	2.0	22	90	9	70	67	0	11	20	1.22
44776--44831	10	5.5	10	75	10	51	69	0	5	25	1.09
45487--45673	65	2.8	69	80	8	215	55	14	0	28	1.44
52106--52855	54	13.9	54	83	3	922	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59306--59578	54	5.1	54	85	2	379	33	22	17	26	1.96
59306--59578	108	2.5	108	90	1	440	33	22	17	26	1.96

Tables:   1

The End!