genome.fa.s741.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000741.1 Hibiscus syriacus cultivar Beakdansim tig00001431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89466

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651--1722	36	2.0	36	94	5	128	47	16	5	30	1.70
3464--3501	20	1.9	20	89	10	60	18	42	23	15	1.89
9251--9288	20	1.9	20	94	0	67	21	39	26	13	1.89
23657--24720	531	2.0	531	100	0	2128	28	15	23	32	1.95
26697--26747	21	2.4	21	96	0	93	29	19	21	29	1.98
28209--28276	33	2.1	33	91	0	109	30	10	8	50	1.67
28498--28536	15	2.5	16	91	4	62	41	0	7	51	1.31
29636--29673	20	1.9	20	88	0	58	21	26	10	42	1.85
29832--29891	31	1.9	31	93	6	104	31	15	10	43	1.79
31536--31573	19	2.0	19	89	0	58	57	0	2	39	1.12
34869--34911	13	3.2	13	83	6	50	58	4	13	23	1.55
34874--34912	14	2.9	14	88	3	53	56	5	12	25	1.57
44842--44868	14	1.9	14	100	0	54	48	14	0	37	1.45
46217--46289	33	2.2	33	97	0	137	53	4	17	24	1.61
47562--47690	20	6.3	20	69	14	66	35	22	20	21	1.96
47621--47875	20	12.6	20	72	11	135	38	23	18	19	1.93
47682--47892	41	5.2	41	91	1	318	38	23	18	19	1.93
47682--47892	20	10.4	20	71	15	148	38	23	18	19	1.93
48453--48531	20	3.9	21	85	5	85	51	16	18	12	1.75
48530--48580	19	2.7	19	84	0	66	43	23	19	13	1.87
48570--48701	19	7.1	19	76	11	112	15	21	18	43	1.87
48636--48679	20	2.3	19	92	4	70	18	22	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394--50773	94	4.1	94	96	1	665	21	12	18	47	1.81
50861--50934	33	2.3	32	84	9	89	45	20	20	13	1.84
50908--50947	14	2.9	14	84	0	53	47	22	20	10	1.79
50935--50972	19	2.0	19	100	0	76	47	31	15	5	1.68
51016--51082	20	3.3	20	91	0	98	22	19	20	37	1.95
53027--53062	14	2.6	14	90	0	54	30	0	22	47	1.52
53175--53259	33	2.5	33	90	1	125	44	18	22	14	1.85
53268--53361	20	4.7	19	80	7	107	20	19	22	38	1.94
53265--53361	40	2.4	41	86	3	135	19	19	21	39	1.93
55575--55603	3	9.7	3	100	0	58	0	31	0	68	0.89
56695--56802	20	5.4	20	86	2	137	21	18	22	37	1.94
56690--56802	60	1.9	60	87	3	165	22	18	21	38	1.94
56874--57046	20	8.6	20	79	5	186	20	19	24	36	1.95
56876--57046	40	4.2	41	89	1	256	20	18	23	36	1.95
56876--57069	81	2.4	80	87	6	259	21	18	24	36	1.95
57055--57107	20	2.7	20	88	5	72	15	18	22	43	1.87
56876--57107	40	5.8	40	82	5	216	20	18	23	37	1.94
56876--57107	81	2.9	81	82	6	213	20	18	23	37	1.94
57157--57210	20	2.7	19	69	8	54	18	18	29	33	1.95
58199--58237	20	2.0	20	94	0	69	51	15	15	17	1.77
58204--58243	20	2.0	20	90	0	62	47	17	17	17	1.83
58752--58808	20	2.8	20	92	7	98	28	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58752--58866	20	5.7	20	76	2	86	26	17	23	32	1.97
58732--58867	41	3.3	41	73	2	130	26	16	22	33	1.96
58855--58947	20	4.5	21	75	5	91	18	24	17	39	1.91
58855--58947	41	2.3	41	98	0	141	18	24	17	39	1.91
59596--59640	18	2.5	18	88	0	72	26	44	15	13	1.83
60120--60185	20	3.4	20	83	4	82	39	24	21	15	1.91
60259--60304	20	2.4	19	82	7	56	17	23	21	36	1.94
60247--60313	19	3.5	19	77	4	71	14	20	23	40	1.90
62130--62165	14	2.6	14	90	0	54	30	0	22	47	1.52
62283--62340	20	2.9	20	97	0	107	15	22	24	37	1.93
62670--62718	21	2.3	21	100	0	98	28	20	22	28	1.98
65929--66053	33	3.8	33	87	5	191	42	20	22	15	1.89
65930--66053	66	1.9	65	96	1	230	41	20	22	15	1.89
66234--66270	14	2.6	14	91	0	65	45	24	0	29	1.53
69688--69749	20	3.1	20	76	13	56	45	17	24	12	1.84
69713--69812	33	3.0	33	88	2	137	40	26	23	11	1.87
69688--69911	19	12.1	19	77	14	209	45	22	20	11	1.83
69784--69911	39	3.3	39	96	2	233	47	22	18	10	1.80
69912--69971	20	3.1	19	78	9	68	8	16	21	53	1.69
69907--69971	18	3.5	18	81	8	85	9	16	23	50	1.74
70483--70535	20	2.7	20	90	0	79	28	20	26	24	1.99
70544--70597	20	2.7	20	94	0	90	25	20	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70668--70708	21	2.0	21	85	0	55	34	31	17	17	1.93
71182--71238	30	1.9	30	85	7	80	40	12	3	43	1.59
74330--74366	18	2.1	18	90	10	58	72	2	0	24	0.97
75121--75199	35	2.4	33	83	10	92	35	15	30	18	1.92
75131--75199	35	1.9	36	91	2	113	34	15	30	18	1.93
75281--75338	19	3.1	19	70	9	55	50	0	0	50	1.00
75600--75639	19	2.1	19	100	0	80	32	37	5	25	1.77
77280--77634	179	2.0	172	96	3	647	48	8	8	34	1.65
82476--82525	25	2.0	24	85	11	66	36	10	10	44	1.72
83242--83302	20	3.1	19	86	11	79	16	39	27	16	1.90
86019--86077	20	2.8	21	82	7	75	18	37	27	16	1.93
87928--87967	20	2.0	20	95	4	73	27	15	20	37	1.92

Tables:   1

The End!