genome.fa.s7410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007410.1 Hibiscus syriacus cultivar Beakdansim tig00020021_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  274377

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699--738	21	1.9	21	85	10	55	62	0	17	20	1.33
760--798	21	1.9	20	89	5	60	23	2	38	35	1.68
3327--3406	35	2.2	37	86	4	110	30	37	3	28	1.75
8967--9046	35	2.2	37	88	4	119	30	38	3	27	1.74
14701--14744	1	44.0	1	100	0	88	0	0	0	100	0.00
16196--16239	21	2.2	21	92	8	74	47	6	11	34	1.66
19383--19417	8	4.6	8	86	13	56	0	22	0	77	0.78
19377--19440	14	4.6	14	77	16	62	3	18	0	78	0.89
19376--19439	19	3.2	19	79	18	67	3	18	0	78	0.89
19375--19425	22	2.3	20	78	15	57	3	19	0	76	0.94
20150--20201	21	2.6	21	88	11	74	48	7	11	32	1.68
35265--35292	12	2.3	12	100	0	56	0	14	7	78	0.95
35248--35293	20	2.2	20	88	3	65	0	10	13	76	1.03
52606--52667	21	3.1	21	75	6	58	3	14	4	77	1.06
62548--62610	5	12.6	5	73	23	53	1	14	4	79	0.97
62552--62611	10	6.2	9	76	17	59	1	13	5	80	0.96
62552--62607	18	2.9	21	82	17	68	1	14	5	78	1.00
62926--62966	22	1.9	21	90	5	64	26	2	36	34	1.70
66103--66154	19	2.6	21	90	6	81	46	7	13	32	1.72
70204--70254	18	2.6	20	87	9	70	47	7	13	31	1.72
73259--73305	14	3.1	15	75	12	51	72	6	19	2	1.17
82058--82105	15	3.1	15	77	17	53	8	27	0	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83531--83574	22	2.0	22	100	0	88	45	13	9	31	1.75
89918--89947	13	2.4	13	94	5	53	43	0	30	26	1.55
94709--94744	19	1.9	18	88	5	54	38	13	5	41	1.68
94709--94760	21	2.6	20	84	6	61	40	13	5	40	1.68
96561--96600	20	1.9	22	85	10	57	40	12	30	17	1.86
104493--104624	52	2.5	53	88	2	194	28	21	10	39	1.87
108424--108792	55	6.7	55	90	0	569	28	21	15	34	1.94
108754--109909	54	21.8	53	82	10	993	22	27	18	32	1.97
108770--109909	108	10.7	107	84	6	1341	22	27	18	31	1.97
119576--119636	25	2.4	25	77	5	77	72	8	8	11	1.29
122284--122415	52	2.5	53	88	2	194	28	21	10	39	1.87
124046--124070	4	6.2	4	100	0	50	0	24	0	76	0.80
124551--124615	13	5.4	12	75	21	57	29	3	35	32	1.73
124533--124637	36	2.9	36	94	1	176	29	4	35	30	1.78
129193--129230	13	3.4	11	83	16	51	78	0	21	0	0.74
129193--129230	5	7.8	5	83	16	53	78	0	21	0	0.74
129193--129228	18	1.9	19	94	5	65	77	0	22	0	0.76
129192--129234	11	3.7	11	82	17	52	79	0	20	0	0.74
139441--139505	13	5.4	12	75	21	57	29	3	35	32	1.73
139423--139527	36	2.9	36	94	1	176	29	4	35	30	1.78
145909--146040	52	2.5	53	87	2	185	28	21	10	38	1.87
147575--147641	4	17.0	4	89	9	102	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154611--154742	52	2.5	53	88	2	194	28	21	10	39	1.87
156371--156439	4	17.2	4	96	0	129	1	23	0	75	0.89
162453--162661	79	2.6	79	77	3	175	31	18	9	41	1.82
162634--162765	52	2.5	53	88	2	194	28	21	10	39	1.87
166066--166107	21	2.0	21	85	0	57	23	30	9	35	1.87
169742--169799	24	2.4	24	91	2	98	10	12	5	72	1.26
169835--169925	25	3.7	25	94	5	168	0	12	12	75	1.04
170292--170393	35	2.9	35	88	1	159	32	3	37	26	1.75
182574--182616	23	1.9	21	81	13	50	37	13	16	32	1.88
184772--184829	24	2.4	23	77	5	62	56	15	13	13	1.67
189706--189772	32	2.1	33	81	13	77	59	1	23	14	1.44
193627--193660	17	2.0	17	94	0	59	35	0	32	32	1.58
194135--194201	32	2.1	33	81	13	77	59	0	25	14	1.36
198760--198798	20	2.0	19	85	5	51	48	10	12	28	1.74
201207--201272	28	2.5	28	82	7	75	7	18	4	69	1.29
201991--202033	19	2.2	20	91	4	70	48	4	9	37	1.56
205759--205807	19	2.5	20	78	21	59	24	8	0	67	1.18
209582--209634	23	2.3	23	93	0	88	30	13	37	18	1.89
219549--219580	15	2.1	16	94	5	57	28	25	25	21	1.99
220448--220496	19	2.5	20	78	21	59	24	8	0	67	1.18
221449--222889	720	2.0	723	88	3	2161	30	24	17	27	1.97
223146--223194	19	2.5	20	78	21	59	24	8	0	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223662--223715	23	2.2	25	87	6	76	9	18	12	59	1.60
240328--240367	19	2.2	19	86	4	55	57	17	15	10	1.64
245373--245476	33	3.1	33	82	9	95	30	36	1	30	1.69
245800--245867	26	2.6	26	97	0	127	17	33	19	29	1.95
266179--266245	24	2.8	24	75	6	64	64	16	14	4	1.45

Tables:   1

The End!