genome.fa.s7411.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007411.1 Hibiscus syriacus cultivar Beakdansim tig00020022_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95329

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097--1124	14	2.0	14	100	0	56	28	14	21	35	1.92
11071--11119	6	8.2	6	93	0	80	34	0	61	4	1.15
14769--14823	23	2.3	25	87	12	96	45	3	7	43	1.49
14773--14821	23	2.1	23	100	0	98	42	4	8	44	1.53
15098--15144	23	2.0	23	100	0	94	38	8	12	40	1.74
18885--19049	84	2.0	84	96	0	303	21	12	16	49	1.78
32665--32722	21	2.8	21	89	0	89	37	15	15	31	1.89
42878--42935	22	2.6	23	86	8	75	67	0	6	25	1.16
42933--42982	27	1.9	25	84	8	64	52	6	2	40	1.38
42947--43128	38	5.0	37	73	12	128	43	6	4	45	1.48
43114--43142	14	2.0	15	93	6	51	51	6	0	41	1.28
43007--43257	122	2.0	125	94	3	447	43	6	4	45	1.50
42943--43355	37	10.8	37	72	17	231	44	6	4	44	1.49
43226--43357	39	3.6	37	81	12	130	47	7	3	41	1.47
43969--44420	84	5.4	83	81	5	509	24	20	25	29	1.99
43885--44420	165	3.2	164	80	4	612	25	19	25	30	1.98
43965--44420	248	1.8	249	83	4	614	24	19	25	29	1.99
44440--45116	105	6.4	104	96	1	1174	21	16	26	34	1.95
50380--50437	22	2.6	23	86	8	75	67	0	6	25	1.16
50435--50484	27	1.9	25	84	8	64	52	6	2	40	1.38
50449--50836	38	10.0	36	72	17	212	44	6	4	45	1.48
50445--50838	75	5.1	77	70	19	241	44	6	4	44	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50601--50677	25	3.0	25	72	7	73	46	5	2	45	1.39
50509--50762	127	2.0	127	96	1	474	43	6	4	45	1.50
50620--50649	15	1.9	16	93	6	53	53	6	0	40	1.27
50636--50863	36	6.1	37	77	13	198	45	7	3	43	1.49
50734--50865	39	3.6	37	81	12	130	47	7	3	41	1.47
54463--54530	31	2.2	31	81	0	82	48	11	16	23	1.79
64751--64816	31	2.1	32	88	2	98	34	10	13	40	1.79
64770--64916	78	1.9	78	91	0	240	29	8	22	39	1.84
67898--67942	18	2.4	19	85	10	58	28	20	26	24	1.99
67914--68073	65	2.5	64	85	7	200	27	18	23	30	1.98
68875--68932	30	1.9	31	85	3	82	48	6	12	32	1.67
73453--73506	28	2.0	27	85	3	72	59	0	7	33	1.25
81811--81875	31	2.1	31	85	0	85	23	18	13	44	1.85
82068--82108	2	20.5	2	100	0	82	51	0	0	48	1.00
91841--91898	21	2.7	21	70	21	57	41	12	6	39	1.69
93503--93548	19	2.4	19	96	0	83	23	36	17	21	1.94

Tables:   1

The End!