genome.fa.s7413.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007413.1 Hibiscus syriacus cultivar Beakdansim tig00020038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67654

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--188	22	2.5	23	74	2	62	24	21	24	29	1.99
6128--6192	29	2.2	29	83	5	78	49	7	10	32	1.66
6587--6650	29	2.2	30	77	8	69	48	9	4	37	1.56
9340--9399	27	2.2	26	80	8	66	58	1	3	36	1.25
13534--13632	33	3.0	33	90	1	162	24	14	24	37	1.92
15164--15211	22	2.2	22	92	0	78	25	10	8	56	1.61
15330--15405	30	2.5	30	95	0	134	21	23	38	17	1.93
15580--15681	50	2.0	50	98	0	195	25	2	15	55	1.54
16902--16965	31	2.1	31	90	0	101	29	10	10	48	1.73
17112--17173	27	2.3	27	82	0	70	54	0	4	40	1.22
17131--17207	24	3.0	25	81	7	84	50	1	5	42	1.32
24304--24444	71	2.0	71	86	8	200	51	7	12	29	1.66
24638--24699	33	1.9	32	93	3	106	46	8	4	40	1.55
24625--24725	19	5.6	19	67	15	61	47	6	2	42	1.45
24637--24707	26	2.8	25	77	14	81	47	8	4	39	1.53
25659--25723	24	2.7	24	92	0	112	32	21	21	24	1.98
26860--26900	18	2.3	18	86	0	55	26	17	2	53	1.56
28137--28176	20	2.0	21	85	14	57	42	5	5	47	1.47
28387--28425	19	2.1	19	95	0	69	20	38	15	25	1.92
28381--28533	65	2.4	65	85	3	202	29	26	16	27	1.97
29465--29508	18	2.5	17	82	7	61	54	27	0	18	1.44
29476--29512	18	2.0	19	94	5	67	59	27	0	13	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29822--29865	21	2.1	21	86	0	61	38	15	36	9	1.80
37239--37401	65	2.5	66	83	3	206	26	14	26	31	1.95
37349--37387	19	2.1	19	90	0	60	25	12	38	23	1.90
37618--37657	20	2.0	21	85	14	57	45	7	5	42	1.54
40186--40274	24	3.7	24	78	3	97	38	21	16	23	1.93
41414--41453	18	2.2	18	86	0	53	25	17	2	55	1.55
44585--44666	6	13.5	6	78	18	64	14	3	2	79	0.98
44585--44684	35	2.8	35	82	11	96	15	5	3	77	1.07
44566--44683	29	4.1	29	74	12	107	19	3	3	73	1.12
44614--44691	37	2.1	37	83	4	95	12	6	3	76	1.11
44528--44718	87	2.2	86	77	9	192	14	4	5	74	1.16
45679--45713	18	1.9	18	88	0	52	28	17	0	54	1.43
48854--48912	6	9.7	6	82	15	68	13	3	1	81	0.90
48850--48906	30	1.9	30	92	3	98	15	1	3	78	0.96
48852--48994	36	3.9	35	76	13	112	11	6	4	76	1.12
50632--50712	35	2.3	35	81	8	85	29	9	1	59	1.38
53184--53239	16	3.4	16	81	13	60	39	7	26	26	1.82
53565--53640	34	2.2	34	97	0	143	31	40	23	3	1.73
53554--53640	34	2.6	32	90	3	111	29	42	21	5	1.76
53817--53885	33	2.0	35	86	8	97	47	31	7	13	1.69
53908--53969	30	2.0	30	84	6	79	51	24	4	19	1.66
54632--54773	58	2.4	58	90	3	223	34	24	11	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54749--54797	20	2.5	20	89	0	80	32	24	10	32	1.89
54763--54826	20	3.2	20	82	4	58	29	23	12	34	1.92
55342--55462	20	6.0	21	70	12	83	26	12	28	33	1.92
55357--55421	21	3.2	20	75	18	62	30	9	26	33	1.88

Tables:   1

The End!