Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007415.1 Hibiscus syriacus cultivar Beakdansim tig00020041_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69580

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2602--2647
18
2.6
18
85
0
65
34
13
28
23
1.92
4329--4373
2
22.5
2
100
0
90
51
0
0
48
1.00
5812--5855
22
2.0
22
82
8
54
43
6
4
45
1.51
10738--10780
2
21.5
2
100
0
86
51
0
0
48
1.00
11768--11823
27
2.1
27
86
6
78
16
7
23
53
1.67
14046--14087
16
2.6
16
81
7
50
59
2
0
38
1.10
19675--19892
110
2.0
106
92
5
357
44
11
8
35
1.71
20561--20618
30
1.9
30
86
6
82
29
0
1
68
0.99
20935--20967
17
1.9
17
88
11
50
51
6
0
42
1.26
21332--21370
16
2.4
17
91
4
62
17
5
2
74
1.12
22427--22460
2
17.0
2
100
0
68
50
0
0
50
1.00
25008--25055
9
5.0
10
75
10
55
70
6
6
16
1.28
25008--25055
19
2.5
19
89
0
78
70
6
6
16
1.28
24912--25126
113
1.9
114
93
1
369
49
7
3
39
1.49
30710--30744
14
2.6
14
90
4
54
37
0
0
62
0.95
48963--49008
20
2.3
20
88
0
65
45
0
2
52
1.13
52346--52379
12
2.8
12
95
0
59
38
23
20
17
1.93
54216--54333
63
1.9
62
89
1
182
37
22
16
24
1.93
54216--54375
63
2.5
62
84
6
180
35
20
17
26
1.95
55020--55086
23
2.9
23
93
0
107
20
23
25
29
1.99
61182--61301
64
1.9
63
85
1
168
35
22
16
25
1.95
61183--61343
63
2.5
64
81
5
166
33
22
17
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61985--62044
23
2.6
23
89
0
93
18
26
26
28
1.98
66112--66167
12
5.0
12
80
8
57
42
19
19
17
1.89
66111--66152
20
2.0
21
90
9
68
47
14
19
19
1.82
66199--66238
20
2.0
21
90
5
64
22
32
15
30
1.94

Tables:   1

The End!