Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007416.1 Hibiscus syriacus cultivar Beakdansim tig00020047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87986

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9108--9134
4
6.8
4
100
0
54
74
0
0
25
0.83
9186--9225
14
2.9
14
88
7
55
40
27
7
25
1.82
15051--15112
23
2.7
23
94
0
115
24
20
17
37
1.94
15559--15593
14
2.3
16
90
9
56
48
0
8
42
1.33
15591--15639
19
2.6
18
81
9
62
73
2
4
20
1.10
16240--16418
64
2.7
64
84
10
209
56
15
0
27
1.44
18069--18143
27
2.7
27
79
8
71
66
1
9
22
1.28
18098--18143
14
3.2
15
78
9
51
69
2
8
19
1.25
21680--21823
64
2.2
61
77
16
132
58
13
0
27
1.41
22122--22283
83
2.0
83
92
0
270
32
25
9
32
1.88
30320--30358
19
2.0
19
90
5
60
66
10
2
20
1.33
30735--30759
6
4.2
6
100
0
50
16
32
36
16
1.90
30870--30894
10
2.5
10
100
0
50
48
0
8
44
1.32
31621--31651
2
15.5
2
100
0
62
48
0
0
51
1.00
37357--37409
25
2.1
25
100
0
106
28
7
32
32
1.85
39609--39650
18
2.3
18
100
0
84
21
23
16
38
1.93
45974--46044
22
3.2
22
93
2
115
42
8
0
49
1.33
47804--47846
2
21.5
2
100
0
86
48
0
0
51
1.00
49138--49165
9
3.1
9
100
0
56
10
57
32
0
1.33
49190--49277
10
9.1
10
74
12
85
19
23
29
27
1.98
49190--49279
19
4.7
19
88
4
103
18
25
28
26
1.98
49190--49279
38
2.3
39
84
5
121
18
25
28
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49273--49330
17
3.4
17
97
0
107
17
43
24
15
1.87
49320--49355
7
5.4
7
87
12
58
16
30
30
22
1.96
49320--49355
13
2.8
13
100
0
72
16
30
30
22
1.96
50226--50349
63
2.0
63
82
6
153
16
28
29
25
1.97
56561--56649
10
9.3
9
76
11
79
16
25
29
28
1.97
56578--56649
19
3.8
19
92
5
119
16
26
31
25
1.96
56560--56649
38
2.3
39
86
5
121
17
25
28
27
1.98
56643--56700
17
3.4
17
97
0
107
17
43
24
15
1.87
56690--56725
7
5.4
7
87
12
58
16
30
30
22
1.96
56690--56725
13
2.8
13
100
0
72
16
30
30
22
1.96
57595--57718
63
2.0
63
80
6
144
18
28
27
25
1.98
63713--63830
3
39.3
3
81
18
140
29
0
4
66
1.11
71475--71520
21
2.2
21
92
0
74
30
13
41
15
1.85
76629--76719
45
2.0
44
87
2
128
36
8
3
51
1.49
76629--76720
44
2.1
43
86
8
123
36
8
3
51
1.49
85976--86141
86
1.9
86
86
2
235
22
16
16
43
1.87

Tables:   1

The End!