genome.fa.s7417.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007417.1 Hibiscus syriacus cultivar Beakdansim tig00020059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140289

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15605--15707	31	3.3	31	72	17	81	27	13	6	52	1.65
28821--28860	2	20.0	2	90	10	64	47	0	2	50	1.14
33872--33947	16	4.8	16	73	3	64	0	22	9	68	1.17
34412--34513	3	34.0	3	91	3	161	62	0	3	33	1.13
34834--35609	113	6.9	113	96	0	1383	28	19	14	37	1.91
36339--36648	83	3.7	83	95	1	543	36	23	13	26	1.92
37784--37888	9	12.2	9	78	16	68	1	16	0	81	0.77
37784--37891	7	15.9	7	78	10	109	1	16	0	81	0.78
37784--37891	27	4.2	27	86	11	140	1	16	0	81	0.78
50182--50259	29	2.7	30	78	11	81	0	24	8	66	1.20
50694--50725	11	2.8	11	95	4	55	43	0	0	56	0.99
50721--50836	3	38.7	3	90	3	180	62	0	4	33	1.15
53095--53131	18	2.1	18	89	0	56	64	13	5	16	1.45
54706--54739	17	2.0	17	88	0	50	58	5	0	35	1.22
61143--61182	21	1.9	21	89	0	62	25	40	25	10	1.86
61552--61597	23	2.0	23	83	12	58	54	2	4	39	1.32
65106--65220	30	3.8	30	76	10	119	34	6	0	59	1.22
65105--65220	59	1.9	61	86	10	168	34	6	0	59	1.22
65540--65611	21	3.6	19	79	15	83	51	0	8	40	1.32
67308--67333	2	13.0	2	100	0	52	50	0	0	50	1.00
68806--68871	30	2.2	31	83	2	80	42	10	21	25	1.85
71424--71463	21	1.9	21	89	0	62	32	15	27	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78194--78227	17	2.0	17	88	0	50	29	8	20	41	1.82
78343--78499	21	7.8	20	72	7	84	38	24	17	19	1.92
78466--78658	20	9.6	20	83	4	228	35	25	20	18	1.95
79156--79213	21	2.8	20	84	5	80	43	17	27	12	1.84
79197--79253	14	3.7	14	75	20	60	43	22	24	8	1.81
79189--79269	33	2.5	33	95	0	144	46	22	22	8	1.78
79265--79329	19	3.7	19	72	19	68	10	23	23	43	1.85
79287--79343	14	3.7	14	75	20	60	8	24	24	42	1.83
79270--79351	33	2.5	33	95	0	155	9	23	20	46	1.80
81050--81425	93	4.1	93	98	0	727	22	12	19	45	1.83
81473--81600	19	7.3	18	71	19	101	45	27	17	9	1.79
81509--81600	33	2.8	32	90	6	141	45	26	19	8	1.79
81596--81714	19	6.8	18	74	19	110	8	19	25	47	1.77
81618--81674	14	3.7	14	72	20	51	7	19	28	45	1.76
81601--81693	33	2.8	33	91	0	159	8	19	24	47	1.77
81596--81730	19	7.6	19	73	20	105	9	18	25	45	1.80
83654--83689	14	2.6	14	95	0	63	33	0	22	44	1.53
83792--83889	19	5.4	19	84	13	143	45	17	22	14	1.84
83792--83908	53	2.2	53	98	1	227	44	17	23	13	1.85
83898--84119	19	12.7	19	76	18	241	14	20	17	46	1.83
83904--84091	52	3.6	52	96	0	331	14	21	16	47	1.81
83922--84133	33	6.2	33	75	14	198	13	20	17	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86636--86682	24	2.0	24	87	8	69	38	21	14	25	1.92
87396--87607	20	10.2	20	79	8	183	19	18	25	36	1.94
87432--87485	26	2.1	26	100	0	108	18	14	25	40	1.89
87419--87485	26	2.8	25	87	12	81	19	14	25	40	1.90
87412--87504	46	2.0	46	93	4	161	19	16	26	37	1.92
87594--87676	21	4.0	21	73	6	78	25	16	24	33	1.96
87574--87672	42	2.4	43	77	11	100	21	18	23	37	1.94
93483--93537	22	2.4	23	73	11	60	54	7	14	23	1.65
94329--94442	59	1.9	58	84	5	149	37	20	14	27	1.92
93994--94604	305	2.0	305	94	1	1064	32	18	16	32	1.93
94922--95107	92	2.0	92	94	0	327	47	9	11	31	1.71
95358--95415	20	3.0	20	69	23	61	41	6	3	48	1.47
95954--95978	6	4.2	6	100	0	50	16	0	48	36	1.46
99511--99553	4	10.8	4	94	0	59	44	23	6	25	1.78
99666--99690	4	6.2	4	100	0	50	52	24	0	24	1.48
109240--109357	60	2.0	59	80	8	132	38	6	23	31	1.81
110155--110229	25	2.9	25	75	11	71	34	1	2	61	1.18
111142--111188	24	2.0	24	83	8	60	42	0	2	55	1.12
118416--118445	11	2.9	10	90	9	51	30	10	3	56	1.48
121674--121725	14	3.6	14	76	19	54	15	0	40	44	1.46
124204--124271	37	1.9	36	85	11	97	52	0	0	47	1.00
129355--129379	8	3.1	8	100	0	50	28	0	60	12	1.32

Tables:   1

The End!