Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007418.1 Hibiscus syriacus cultivar Beakdansim tig00020063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1198774
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:689228 original size:45 final size:45
Alignment explanation
Indices: 689135--689489 Score: 294
Period size: 45 Copynumber: 7.9 Consensus size: 45
689125 TTATTTTTGT
* * * *
689135 CTTTCTCATGAAGAGAAATAAAT-TTTTAGTGTTTTC-TTCATTGT
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTC-TTGA
* *
689179 CTTTCTCGTGAAGAAAAGTCGATCTTTTAGTGTTTTCATTCTTGA
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTCTTGA
* * * *
689224 CTTTCTCATGAAGTGGAGTCAATCTTTTAGTGTTGTCATTCATT-A
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTC-TTGA
* * * * *
689269 -TTTTTCGTGAAGACAAGTCAACCTTTTAGTGATGTT-ATTCTTGG
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTG-TTTTCATTCTTGA
* * * * * * *
689313 CTTTCTCATGAAGAGAATTAAACCTTTTAGTGGTGTT-ACTATTGA
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGT-GTTTTCATTCTTGA
* * **
689358 CTCTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGCCATTCTTGA
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTCTTGA
** * * *
689403 CTTTCTCGAAAAGAGAAGTCAATCTTTCAGTGTTGTGATTCTTGA
1 CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTCTTGA
* * *
689448 CTTTCT--TAGAAAGAGAAGTCAACCTTTTAGTGATGTCATTCT
1 CTTTCTCGT-G-AAGAGAAGTCAATCTTTTAGTGTTTTCATTCT
689490 CAACTTGACT
Statistics
Matches: 248, Mismatches: 53, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
43 2 0.01
44 49 0.20
45 191 0.77
46 6 0.02
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (45 bp):
CTTTCTCGTGAAGAGAAGTCAATCTTTTAGTGTTTTCATTCTTGA
Found at i:689425 original size:179 final size:179
Alignment explanation
Indices: 689123--689489 Score: 449
Period size: 179 Copynumber: 2.1 Consensus size: 179
689113 AATATTTTGG
* * * * * *
689123 TGTTATTTTTGTCTTTCTCATGAAGAGAAATAAATTTTTAGTGTTTTCTTCATTGTCTTTCTCGT
1 TGTTATTCTTGGCTTTCTCATGAAGAGAAATAAACTTTTAGTGTTTACTTCATTGACTCTCTCGT
* ** * * * *
689188 GAAGAAAAGTCGATCTTTTAGTGTTTTCATTCTTGACTTTCTCATGAAGTGGAGTCAATCTTTTA
66 GAAGAAAAGTCAATCTTTTAGTGTTGCCATTCTTGACTTTCTCATAAAGAGAAGTCAATCTTTCA
* *
689253 GTGTTGTCATTCATT-A-TTT-TTCGTGAAGACAAGTCAACCTTTTAGTGA
131 GTGTTGTCATTC-TTGACTTTCTTAG-AAAGACAAGTCAACCTTTTAGTGA
*
689301 TGTTATTCTTGGCTTTCTCATGAAGAGAATTAAACCTTTTAGTGGTGTTAC-T-ATTGACTCTCT
1 TGTTATTCTTGGCTTTCTCATGAAGAGAAATAAA-CTTTTAGT-GT-TTACTTCATTGACTCTCT
**
689364 CGTGAAGAGGAGTCAATCTTTTAGTGTTGCCATTCTTGACTTTCTCGA-AAAGAGAAGTCAATCT
63 CGTGAAGAAAAGTCAATCTTTTAGTGTTGCCATTCTTGACTTTCTC-ATAAAGAGAAGTCAATCT
* *
689428 TTCAGTGTTGTGATTCTTGACTTTCTTAGAAAGAGAAGTCAACCTTTTAGTGA
127 TTCAGTGTTGTCATTCTTGACTTTCTTAGAAAGACAAGTCAACCTTTTAGTGA
*
689481 TGTCATTCT
1 TGTTATTCT
689490 CAACTTGACT
Statistics
Matches: 161, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
178 33 0.20
179 85 0.53
180 37 0.23
181 6 0.04
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (179 bp):
TGTTATTCTTGGCTTTCTCATGAAGAGAAATAAACTTTTAGTGTTTACTTCATTGACTCTCTCGT
GAAGAAAAGTCAATCTTTTAGTGTTGCCATTCTTGACTTTCTCATAAAGAGAAGTCAATCTTTCA
GTGTTGTCATTCTTGACTTTCTTAGAAAGACAAGTCAACCTTTTAGTGA
Found at i:689448 original size:90 final size:89
Alignment explanation
Indices: 689135--689489 Score: 333
Period size: 90 Copynumber: 4.0 Consensus size: 89
689125 TTATTTTTGT
* * * * *
689135 CTTTCTCATGAAGAGAAATAAAT-TTTTAGTGTTTTC-TTCATTGTCTTTCTCGTGAAGAAAAGT
1 CTTTCTCATGAAGAGAAGTCAATCTTTTAGTGTTGTCATTC-TTGAC-TTCTCGTGAAGAGAAGT
* * * *
689198 CGATCTTTTAGTGTTTTCATTCTTGA
64 CAACCTTTTAGTGATGTCATTCTTGA
* * * * *
689224 CTTTCTCATGAAGTGGAGTCAATCTTTTAGTGTTGTCATTCATT-ATTTTTCGTGAAGACAAGTC
1 CTTTCTCATGAAGAGAAGTCAATCTTTTAGTGTTGTCATTC-TTGACTTCTCGTGAAGAGAAGTC
* *
689288 AACCTTTTAGTGATGTTATTCTTGG
65 AACCTTTTAGTGATGTCATTCTTGA
* * * * * * * *
689313 CTTTCTCATGAAGAGAATTAAACCTTTTAGTGGTGTTACTATTGACTCTCTCGTGAAGAGGAGTC
1 CTTTCTCATGAAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACT-TCTCGTGAAGAGAAGTC
* * *
689378 AATCTTTTAGTGTTGCCATTCTTGA
65 AACCTTTTAGTGATGTCATTCTTGA
* * * *
689403 CTTTCTCGA-AAAGAGAAGTCAATCTTTCAGTGTTGTGATTCTTGACTT-TCTTAGAAAGAGAAG
1 CTTTCTC-ATGAAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTCTCGT-G-AAGAGAAG
689466 TCAACCTTTTAGTGATGTCATTCT
63 TCAACCTTTTAGTGATGTCATTCT
689490 CAACTTGACT
Statistics
Matches: 212, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
88 5 0.02
89 90 0.42
90 110 0.52
91 7 0.03
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (89 bp):
CTTTCTCATGAAGAGAAGTCAATCTTTTAGTGTTGTCATTCTTGACTTCTCGTGAAGAGAAGTCA
ACCTTTTAGTGATGTCATTCTTGA
Found at i:689478 original size:135 final size:134
Alignment explanation
Indices: 689220--689479 Score: 335
Period size: 135 Copynumber: 1.9 Consensus size: 134
689210 GTTTTCATTC
* * * * **
689220 TTGACTTTCTCATGAAGTGGAGTCAATCTTTTAGTGTTGTCATTCATTATTTTTCGTGAAGACAA
1 TTGACTCTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGCCATTCATTATTTCTCGAAAAGACAA
* * * *
689285 GTCAACCTTTTAGTGATGTTATTCTTGGCTTTCTCATGAAGAGAATTAAACCTTTTAGTGGTGTT
66 GTCAACCTTTCAGTGATGTGATTCTTGACTTTCTCATGAAGAGAAGTAAACCTTTTAGTGGTGTT
689350 ACTA
131 ACTA
* *
689354 TTGACTCTCTCGTGAAGAGGAGTCAATCTTTTAGTGTTGCCATTC-TTGACTTTCTCGAAAAGAG
1 TTGACTCTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGCCATTCATT-A-TTTCTCGAAAAGAC
* * * *
689418 AAGTCAATCTTTCAGTGTTGTGATTCTTGACTTTCTTA-GAAAGAGAAGTCAACCTTTTAGTG
64 AAGTCAACCTTTCAGTGATGTGATTCTTGACTTTCTCATG-AAGAGAAGTAAACCTTTTAGTG
689480 ATGTCATTCT
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
133 2 0.02
134 43 0.40
135 62 0.58
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (134 bp):
TTGACTCTCTCATGAAGAGGAGTCAATCTTTTAGTGTTGCCATTCATTATTTCTCGAAAAGACAA
GTCAACCTTTCAGTGATGTGATTCTTGACTTTCTCATGAAGAGAAGTAAACCTTTTAGTGGTGTT
ACTA
Found at i:689518 original size:50 final size:51
Alignment explanation
Indices: 689443--689556 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 51
689433 TGTTGTGATT
* * *
689443 CTTGACTTTCTTAGAAAGAGAAGTCAACCTTTT-AGT-GATGTCATT-CTCAA
1 CTTGACTTTCTCACAAAGAGAAGTCAA-CTTTTCAGTAG-TATCATTCCTCAA
* *
689493 CTTGACTTTCTCACAGAGAGGAGTCAACTTTTCAGTAGTATCATTCCTCAA
1 CTTGACTTTCTCACAAAGAGAAGTCAACTTTTCAGTAGTATCATTCCTCAA
*
689544 CTTAACTTTCTCA
1 CTTGACTTTCTCA
689557 TGTAGAAAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
49 5 0.09
50 32 0.58
51 18 0.33
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (51 bp):
CTTGACTTTCTCACAAAGAGAAGTCAACTTTTCAGTAGTATCATTCCTCAA
Found at i:690761 original size:134 final size:134
Alignment explanation
Indices: 690186--690749 Score: 625
Period size: 134 Copynumber: 4.2 Consensus size: 134
690176 GAAGATAAGA
* * * * *
690186 GAAGCAAATCACGTTCGATTTAATCTTCCCCGAAGAGCAGTGAAGTGGATCAAAATTTCCTCGAG
1 GAAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAATGAAGTGGATCAAAATTTCCTCAAG
* *
690251 TCT-ACTCTCCCCTAAAG-GATAGTGGGAGAAAATTCTTCTTCTTTCAGATTTAAGCA-TCCTAA
66 TCTGA-TCTCCCCTAAAGAG-TAGT-GGAGCAAATTCTTCTTCTTTCAGATTT-AGTATTCCTAA
690313 AGAGCAGC
127 AGAGCAGC
* * *
690321 GAAGCAAATCATGTCCGATTCAATCTTCCCTGAAGAGCAGTGAAGTGGATCAAAATTTCCTCAAG
1 GAAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAATGAAGTGGATCAAAATTTCCTCAAG
* * * * *
690386 TCTGATCTCCCCTAAAGAGCAGTGGAGCATATTCTTCTTCTTTCAAATTTGGTCTTCCTAAAGAG
66 TCTGATCTCCCCTAAAGAGTAGTGGAGCAAATTCTTCTTCTTTCAGATTTAGTATTCCTAAAGAG
*
690451 CAAC
131 CAGC
* * * * **
690455 GAAGTAAATCACA-TTCGATTCAATCTGCCCTGAAGAGAAATGAAGTGGATCAAAGTTTTATCAA
1 GAAGCAAATCA-AGTTCGATTCAATCTTCCCTGAAGAGCAATGAAGTGGATCAAAATTTCCTCAA
* * * * * * * *
690519 GTCTTATTTCCTCTAAAGAGTAGTGTAGCATATTCTTTTTCTTTCAGATTTAGTCTTCCTGAAGA
65 GTCTGATCTCCCCTAAAGAGTAGTGGAGCAAATTCTTCTTCTTTCAGATTTAGTATTCCTAAAGA
*
690584 GTAGC
130 GCAGC
* * * * * *
690589 GAAGTAAATCAAGTTCGATTCAGTGTTCCCTGAAGAGCAACGAAGTGGATCAAAATTTTCTCGAG
1 GAAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAATGAAGTGGATCAAAATTTCCTCAAG
* * * ** * * *
690654 TCTGATATCCCATAAAGAGTAGTAGAGCAAATTCTTCTTCTTTTTGATTTGGTATTCCTGAAGTG
66 TCTGATCTCCCCTAAAGAGTAGTGGAGCAAATTCTTCTTCTTTCAGATTTAGTATTCCTAAAGAG
690719 -ATGC
131 CA-GC
*
690723 AAAGCAAATCAAGTTCGATTCAATCTT
1 GAAGCAAATCAAGTTCGATTCAATCTT
690750 TTGTCAAGAG
Statistics
Matches: 365, Mismatches: 58, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
133 3 0.01
134 282 0.77
135 78 0.21
136 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Consensus pattern (134 bp):
GAAGCAAATCAAGTTCGATTCAATCTTCCCTGAAGAGCAATGAAGTGGATCAAAATTTCCTCAAG
TCTGATCTCCCCTAAAGAGTAGTGGAGCAAATTCTTCTTCTTTCAGATTTAGTATTCCTAAAGAG
CAGC
Found at i:694182 original size:54 final size:53
Alignment explanation
Indices: 694102--694422 Score: 161
Period size: 54 Copynumber: 5.8 Consensus size: 53
694092 CGGCCAACGC
* * *
694102 GATTTTT-TAGAAACTAAGCCTAATTTTCAAGGGTTTCTTGATATTTTTAAAT
1 GATTTTTAAAGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATATTTTTAAAT
* * * * **
694154 GAGTTTTTAAAGAAGCTAAGTCTGATTTTC-AGAAGTTTCTTAACGATTTTCCAAT
1 GA-TTTTTAAAGAAGCTAAGCCTGATTTTCAAG-GGTTTCTTGA-TATTTTTAAAT
* * * * *
694209 GAATTTTAAAGAAGTTGAGCCTGATTTT-TAGAGGTTTCCTT-ATGATTATTTCCAAT
1 GATTTTTAAAGAAGCTAAGCCTGATTTTCAAG-GGTTT-CTTGAT-ATT-TTT-AAAT
* * *
694265 GAATTTCATAA-AAGCTAAGCTTGATTTTCAAGGGTTTCTTGATGATTATTTCCAAA-
1 GATTTTTA-AAGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGAT-ATT-TTT--AAAT
* * * * * * *
694321 AATGTTTTAAAGAAGTTAAGCCTAATTTTTAGGGGTTTCTTAAATATAATTGTAAACT
1 GAT-TTTTAAAGAAGCTAAGCCTGATTTTCAAGGGTTTCTT-GATAT--TTTTAAA-T
* * * *
694379 AAAGTTTTT-AAGAAACTAAGCTTGATTTTCATGGGTTTCTTGAT
1 -GA-TTTTTAAAGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGAT
694423 TAGTAAGTCT
Statistics
Matches: 208, Mismatches: 39, Indels: 39
0.73 0.14 0.14
Matches are distributed among these distances:
52 2 0.01
53 7 0.03
54 58 0.28
55 18 0.09
56 46 0.22
57 39 0.19
58 30 0.14
59 7 0.03
60 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.42
Consensus pattern (53 bp):
GATTTTTAAAGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATATTTTTAAAT
Found at i:694290 original size:56 final size:56
Alignment explanation
Indices: 694110--694361 Score: 191
Period size: 54 Copynumber: 4.6 Consensus size: 56
694100 GCGATTTTTT
* * * * *
694110 AGAAACTAAGCCTAATTTTCAAGGGTTTCTTGAT-ATT-TTT-AAATGAGTTTTTAA
1 AGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATTTCCAATGA-ATTTCAA
* * * * *
694164 AGAAGCTAAGTCTGATTTTC-AGAAGTTTCTTAACGA-T-TTTCCAATGAATTTTAA
1 AGAAGCTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATTTCCAATGAATTTCAA
* * *
694218 AGAAGTTGAGCCTGATTTT-TAGAGGTTTCCTT-ATGATTATTTCCAATGAATTTCATA
1 AGAAGCTAAGCCTGATTTTCAAG-GGTTT-CTTGATGATTATTTCCAATGAATTTCA-A
* * *
694275 A-AAGCTAAGCTTGATTTTCAAGGGTTTCTTGATGATTATTTCCAA-AAATGTTTTAA
1 AGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATTTCCAATGAA--TTTCAA
* * * *
694331 AGAAGTTAAGCCTAATTTTTAGGGGTTTCTT
1 AGAAGCTAAGCCTGATTTTCAAGGGTTTCTT
694362 AAATATAATT
Statistics
Matches: 160, Mismatches: 25, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
53 2 0.01
54 61 0.38
55 15 0.09
56 50 0.31
57 32 0.20
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (56 bp):
AGAAGCTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATTTCCAATGAATTTCAA
Found at i:694358 original size:57 final size:55
Alignment explanation
Indices: 694158--694362 Score: 184
Period size: 56 Copynumber: 3.7 Consensus size: 55
694148 TTAAATGAGT
* * * ** * *
694158 TTTTAAAGAAGCTAAGTCTGATTTTCAGAAGTTTCTTAACGA-T-TTTCCAATGAA
1 TTTTAAAGAAGTTAAGCCTGATTTTTAGGGGTTTCTT-ATGATTATTTCCAATAAA
* * *
694212 TTTTAAAGAAGTTGAGCCTGATTTTTAGAGGTTTCCTTATGATTATTTCCAATGAA
1 TTTTAAAGAAGTTAAGCCTGATTTTTAGGGGTTT-CTTATGATTATTTCCAATAAA
* * * * *
694268 TTTCATAA-AAGCTAAGCTTGATTTTCAAGGGTTTCTTGATGATTATTTCCAA-AAA
1 TTTTA-AAGAAGTTAAGCCTGATTTTTAGGGGTTTCTT-ATGATTATTTCCAATAAA
*
694323 TGTTTTAAAGAAGTTAAGCCTAATTTTTAGGGGTTTCTTA
1 --TTTTAAAGAAGTTAAGCCTGATTTTTAGGGGTTTCTTA
694363 AATATAATTG
Statistics
Matches: 123, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
54 32 0.26
55 9 0.07
56 52 0.42
57 30 0.24
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (55 bp):
TTTTAAAGAAGTTAAGCCTGATTTTTAGGGGTTTCTTATGATTATTTCCAATAAA
Found at i:694840 original size:238 final size:239
Alignment explanation
Indices: 694413--695208 Score: 1012
Period size: 240 Copynumber: 3.3 Consensus size: 239
694403 ATTTTCATGG
* * * *
694413 GTTTCTTGA-TTAGTAAGTCTTTCGGGCCATTAGTATGTCTTTCAAGCATTATGTTTAAATCCTT
1 GTTTCTT-ACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTT
* * * * * * * *
694477 CGAGCCATCTATAACTCTTTCAAGCAAGAAGATAAGTCATTCGGGCCATTCATAAGACC-TCTAG
65 CGGGTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCATTTGGGCCATCCATAAGACCTTCGAG
* * * ** * *
694541 CAGGATGTGTTCACATGATTTTCAAAAATTAAGAAAGTTATTTCCAAACTTTCTCATTTAAATCT
130 CAGGATGTTTTCACATGATTTTCTAAAA-TGAGAAAGCCATTTCCAAAGTTTATCATTTAAATCT
* * * *
694606 TTTCTGAAA-ACTGACTTTTTTTAAAGAAAAAAAATGATTTCCAAA
194 TTTCTAAAAGACTGACTTTTTTAAAAGTAAGAAAATGATTTCCAAA
* * *** *
694651 GTTTCATACTTAGTAAGCCCTTCATCCCATCAGTAAGTCTTTCTAGCATGATGTTTAAATCCTTC
1 GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC
*
694716 GGGTCATCTATAAGT-TTGTCGAGCAAGATGATAAGTCATTTGGGCCATCCATAAGACCTTCGCG
66 GGGTCATCTATAAGTCTT-TCGAGCAAGATGATAAGTCATTTGGGCCATCCATAAGACCTTCGAG
* *
694780 CAGGATGTTTTCACGTGATTTTCTAAAATGAGCAAGCCATTTCCAAAGTTTATCATTTAAATCTT
130 CAGGATGTTTTCACATGATTTTCTAAAATGAGAAAGCCATTTCCAAAGTTTATCATTTAAATCTT
* *
694845 TTGTAAAAGACTGACTTTTCTAAAAAGTAAGAAAATGATTTCCAAA
195 TTCTAAAAGACTGACTTTT-TTAAAAGTAAGAAAATGATTTCCAAA
* * *
694891 TTTTCTTACTTAGTAAGTCTTTCGGGTCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC
1 GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC
* * * *
694956 GGGTCATCTATAAGTGTTTTGAACAAGATGATAAGT-ACTTTGGGCCATCCATAAGACCTTCGGG
66 GGGTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCA-TTTGGGCCATCCATAAGACCTTCGAG
* *
695020 CATGATGTTTTCACATGATTTT-TGAAAATGAGAAAGCGATTTCCAAAGTTTATCATTTAAATCT
130 CAGGATGTTTTCACATGATTTTCT-AAAATGAGAAAGCCATTTCCAAAGTTTATCATTTAAATCT
* *
695084 TTTCTCAAAGACTGACTTTTTTGAAAAGTAAGAAAACGATTTCCAAA
194 TTTCTAAAAGACTGACTTTTTT-AAAAGTAAGAAAATGATTTCCAAA
* * * * *
695131 GTTTCTTACTTAGTAAGTCCTTTGGGCCATCAGTAAGTCTTTCGAGCAAGAT-TATAAGTCCTTC
1 GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC
* *
695195 GGATCATCCATAAG
66 GGGTCATCTATAAG
695209 ACCTTCAAAC
Statistics
Matches: 485, Mismatches: 64, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
237 3 0.01
238 138 0.28
239 63 0.13
240 279 0.58
241 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (239 bp):
GTTTCTTACTTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC
GGGTCATCTATAAGTCTTTCGAGCAAGATGATAAGTCATTTGGGCCATCCATAAGACCTTCGAGC
AGGATGTTTTCACATGATTTTCTAAAATGAGAAAGCCATTTCCAAAGTTTATCATTTAAATCTTT
TCTAAAAGACTGACTTTTTTAAAAGTAAGAAAATGATTTCCAAA
Found at i:695374 original size:198 final size:198
Alignment explanation
Indices: 694950--695381 Score: 562
Period size: 198 Copynumber: 2.2 Consensus size: 198
694940 GATGTTTAAA
* * * * * *
694950 TCCTTCGGGTCATCTATAAGTGTTTT-GAACAAGATGATAAGTACTTTGGGCCATCCATAAGACC
1 TCCTTCAGGCCATCAATAAGT-TTTTCGAGCAAGATGATAAGTACTTCGGACCATCCATAAGACC
*** *
695014 TTCGGGCATGATGTTTTCACATGATTTTTGAAAATGAGAAAGCGATTTCCAAAGTTTATCATTTA
65 TTCAAACATGATGTTTTCACATGATTTTCGAAAATGAGAAAGCGATTTCCAAAGTTTATCATTTA
*
695079 AATCTTTTCTCAAAGACTGACTTTTTTGAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAG
130 AACCTTTTCTCAAAGACTGACTTTTTTGAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAG
695144 TAAG
195 TAAG
** * * * * *
695148 TCCTTTGGGCCATCAGTAAGTCTTTCGAGCAAGATTATAAGTCCTTCGGATCATCCATAAGACCT
1 TCCTTCAGGCCATCAATAAGTTTTTCGAGCAAGATGATAAGTACTTCGGACCATCCATAAGACCT
* *
695213 TCAAACATGATGTTTTCACATGATTTTCGAAAATGAGAAAGTGATTTCCAAAGTTTCTCATTTAA
66 TCAAACATGATGTTTTCACATGATTTTCGAAAATGAGAAAGCGATTTCCAAAGTTTATCATTTAA
* * * * * *
695278 ACCTTTTTTGAAA-ATTGATTTTTCTTGAAAAGTAAGAAAGCGATTTCCAATGTTTCTTACTTAG
131 ACCTTTTCTCAAAGACTGACTTTT-TTGAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAG
*
695342 TATG
195 TAAG
* * *
695346 TCCTTCATGCCATTAATAAGTTTTTCGAGCATGATG
1 TCCTTCAGGCCATCAATAAGTTTTTCGAGCAAGATG
695382 TTTAAATCCA
Statistics
Matches: 199, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
197 11 0.06
198 188 0.94
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (198 bp):
TCCTTCAGGCCATCAATAAGTTTTTCGAGCAAGATGATAAGTACTTCGGACCATCCATAAGACCT
TCAAACATGATGTTTTCACATGATTTTCGAAAATGAGAAAGCGATTTCCAAAGTTTATCATTTAA
ACCTTTTCTCAAAGACTGACTTTTTTGAAAAGTAAGAAAACGATTTCCAAAGTTTCTTACTTAGT
AAG
Found at i:699189 original size:42 final size:44
Alignment explanation
Indices: 699120--699217 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 44
699110 TTAATAGTAG
* * *
699120 AAAATGTAGTAAATTATTATAAAATATATTATTTTAATCA-TTT
1 AAAATATAATAAATGATTATAAAATATATTATTTTAATCATTTT
* * *
699163 AAAATATAATAAATGATTAT-AGATATATTATTTTACTTATTTT
1 AAAATATAATAAATGATTATAAAATATATTATTTTAATCATTTT
699206 AAAATAGTAATA
1 AAAATA-TAATA
699218 TATTGTATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 16 0.34
43 26 0.55
44 5 0.11
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (44 bp):
AAAATATAATAAATGATTATAAAATATATTATTTTAATCATTTT
Found at i:699702 original size:27 final size:27
Alignment explanation
Indices: 699667--699719 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
699657 CCGCCATCAC
*
699667 CACTTTGAACTTAAAACTCCATAGCAT
1 CACTTTGAACTTAAAACTCCACAGCAT
* *
699694 CACTTTGAACTTGAAAGTCCACAGCA
1 CACTTTGAACTTAAAACTCCACAGCA
699720 CCAAGATCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (27 bp):
CACTTTGAACTTAAAACTCCACAGCAT
Found at i:706559 original size:16 final size:16
Alignment explanation
Indices: 706540--706577 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
706530 AATCCTTAGT
*
706540 GTGGATAGCTAAGGTA
1 GTGGACAGCTAAGGTA
*
706556 GTGGACGGCTAAGGTA
1 GTGGACAGCTAAGGTA
706572 GTGGAC
1 GTGGAC
706578 GTAGACTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.42, T:0.21
Consensus pattern (16 bp):
GTGGACAGCTAAGGTA
Found at i:706578 original size:16 final size:16
Alignment explanation
Indices: 706547--706578 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
706537 AGTGTGGATA
706547 GCTAAGGTAGTGGACG
1 GCTAAGGTAGTGGACG
706563 GCTAAGGTAGTGGACG
1 GCTAAGGTAGTGGACG
706579 TAGACTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.44, T:0.19
Consensus pattern (16 bp):
GCTAAGGTAGTGGACG
Found at i:708474 original size:16 final size:17
Alignment explanation
Indices: 708453--708485 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
708443 AAAACAAAAC
708453 AAAATAAAAT-AAAATA
1 AAAATAAAATGAAAATA
*
708469 AAAATATAATGAAAATA
1 AAAATAAAATGAAAATA
708486 TTACTATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAATAAAATGAAAATA
Found at i:708970 original size:6 final size:6
Alignment explanation
Indices: 708950--708981 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
708940 TAAACAAGTA
708950 ATACAT ATA-AT ATACAT ATACAT ATACAT ATA
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATA
708982 TATAGTGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (6 bp):
ATACAT
Found at i:708976 original size:12 final size:11
Alignment explanation
Indices: 708950--708985 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
708940 TAAACAAGTA
708950 ATACATATAAT
1 ATACATATAAT
708961 ATACATATACAT
1 ATACATATA-AT
708973 ATACATAT-AT
1 ATACATATAAT
708983 ATA
1 ATA
708986 GTGCCAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 5 0.21
11 9 0.38
12 10 0.42
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (11 bp):
ATACATATAAT
Found at i:711723 original size:1 final size:1
Alignment explanation
Indices: 711713--711788 Score: 62
Period size: 1 Copynumber: 76.0 Consensus size: 1
711703 TATATATATA
* * * * ** * * *
711713 TTTTTATTTTTTATTTTTTTATTTTTTTATTTTTTTAATTTTTTTATTTTTTTTATTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
711778 TTTTTTATTTT
1 TTTTTTTTTTT
711789 GGTTATGTTT
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:711729 original size:5 final size:5
Alignment explanation
Indices: 711714--711927 Score: 96
Period size: 5 Copynumber: 42.8 Consensus size: 5
711704 ATATATATAT
* * * *
711714 TTTTA TTTT- TTATTT TTTTA TTTTT TTATTT TTTTA ATTT- TTTTA TTTT-
1 TTTTA TTTTA TT-TTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA
**
711763 TTTTA TTTT- TTTTA -TTT- TTTTA TTTT- GGTTA TGTTTGCA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTT--A TTTTA
*
711807 TTTTTA CTTTT- TACTT- TTTTA TTTTA TTTTA TTTT- TTCATTA TTTTA
1 -TTTTA -TTTTA T-TTTA TTTTA TTTTA TTTTA TTTTA TT--TTA TTTTA
* **
711854 TTTTG TTTTA TTTTCTA TATTTA GGTTA TTTGT- TTTTA TTTTA -TTTA
1 TTTTA TTTTA -TTT-TA T-TTTA TTTTA TTT-TA TTTTA TTTTA TTTTA
* *
711901 TTTTG TTTTA -CTTA TTTTA -TTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
711928 TATTACCTTT
Statistics
Matches: 161, Mismatches: 22, Indels: 52
0.69 0.09 0.22
Matches are distributed among these distances:
4 38 0.24
5 85 0.53
6 27 0.17
7 9 0.06
8 2 0.01
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:711738 original size:9 final size:9
Alignment explanation
Indices: 711719--711931 Score: 143
Period size: 9 Copynumber: 23.0 Consensus size: 9
711709 TATATTTTTA
711719 TTTTTTA-T
1 TTTTTTATT
711727 TTTTTTA-T
1 TTTTTTATT
711735 TTTTTTA-T
1 TTTTTTATT
*
711743 TTTTTTAAT
1 TTTTTTATT
711752 TTTTTTATT
1 TTTTTTATT
711761 TTTTTTATT
1 TTTTTTATT
711770 TTTTTTA-T
1 TTTTTTATT
711778 TTTTTTATT
1 TTTTTTATT
**
711787 TTGGTTATGT
1 TTTTTTAT-T
711797 TTGCATTTTATT
1 TT---TTTTATT
711809 TTTACTTT-TT
1 TTT--TTTATT
711819 ACTTTTTTATT
1 --TTTTTTATT
711830 TTATTTTA-T
1 TT-TTTTATT
*
711839 TTTTTCA-T
1 TTTTTTATT
*
711847 TATTTTATT
1 TTTTTTATT
711856 TTGTTTTATT
1 TT-TTTTATT
* *
711866 TTCTATATT
1 TTTTTTATT
***
711875 TAGGTTATT
1 TTTTTTATT
711884 TGTTTTTATT
1 T-TTTTTATT
*
711894 TTATTTATT
1 TTTTTTATT
*
711903 TTGTTTTACT
1 TT-TTTTATT
*
711913 TATTTTATT
1 TTTTTTATT
711922 TATTTTTATT
1 T-TTTTTATT
711932 ACCTTTGTTT
Statistics
Matches: 164, Mismatches: 24, Indels: 32
0.75 0.11 0.15
Matches are distributed among these distances:
8 41 0.25
9 67 0.41
10 41 0.25
11 5 0.03
12 6 0.04
13 4 0.02
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.77
Consensus pattern (9 bp):
TTTTTTATT
Found at i:711780 original size:43 final size:43
Alignment explanation
Indices: 711719--711927 Score: 156
Period size: 43 Copynumber: 4.7 Consensus size: 43
711709 TATATTTTTA
*
711719 TTTTTTA-TTTTTTTATTTTTTTATTTTTTTAATTTTTTTATT
1 TTTTTTATTTTTTTTATTTTTTTATTTTTTTAATTTTTTCATT
* * *
711761 TTTTTTATTTTTTTTATTTTTTTATTTTGGTT-ATGTTTGCATT
1 TTTTTTATTTTTTTTATTTTTTTATTTT-TTTAATTTTTTCATT
** * *
711804 TTATTTT-TACTTTTTACTTTTTTATTTTATTTTATTTTTTCA-T
1 TT-TTTTATTTTTTTTATTTTTTTATTTT-TTTAATTTTTTCATT
* * ** * *
711847 TATTTTATTTTGTTTTATTTTCTATATTTAGGTTATTTGTTTTTATT
1 TTTTTTATTTT-TTTTATTTT-TTTATTT-TTTTAATT-TTTTCATT
* *
711894 TTATTTATTTTGTTTTACTTATTTTATTTATTTT
1 TTTTTTATTTT-TTTTA-TTTTTTTATTT-TTTT
711928 TATTACCTTT
Statistics
Matches: 129, Mismatches: 27, Indels: 17
0.75 0.16 0.10
Matches are distributed among these distances:
42 11 0.09
43 54 0.42
44 21 0.16
45 10 0.08
46 5 0.04
47 25 0.19
48 3 0.02
ACGTcount: A:0.15, C:0.03, G:0.04, T:0.78
Consensus pattern (43 bp):
TTTTTTATTTTTTTTATTTTTTTATTTTTTTAATTTTTTCATT
Found at i:712551 original size:3 final size:3
Alignment explanation
Indices: 712543--712642 Score: 110
Period size: 3 Copynumber: 31.0 Consensus size: 3
712533 GATGTGACAT
* *
712543 TAA TAA TAA TAAA TAC TAA TAA TAA TTAA TGA TAA TAA TAA TTAA TATA
1 TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA TAA TAA TAA -TAA TA-A
*
712592 TAT TAA TAA TAA TAAA TAA TAA TAA TAA CTAA TAA TAA CTAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA TAA -TAA TAA TAA
712640 TAA
1 TAA
712643 CAAGTTTCAG
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
3 63 0.75
4 21 0.25
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:712562 original size:10 final size:10
Alignment explanation
Indices: 712544--712642 Score: 82
Period size: 10 Copynumber: 9.8 Consensus size: 10
712534 ATGTGACATT
712544 AATAATAATA
1 AATAATAATA
*
712554 AATACTAAT-
1 AATAATAATA
712563 AATAATTAATGA
1 AATAA-TAAT-A
*
712575 TAATAATAATT
1 -AATAATAATA
*
712586 AAT-ATATATT
1 AATAATA-ATA
712596 AATAATAATA
1 AATAATAATA
712606 AATAATAAT-
1 AATAATAATA
712615 AATAACTAAT-
1 AATAA-TAATA
712625 AATAACTAAT-
1 AATAA-TAATA
712635 AATAATAA
1 AATAATAA
712643 CAAGTTTCAG
Statistics
Matches: 78, Mismatches: 4, Indels: 15
0.80 0.04 0.15
Matches are distributed among these distances:
9 15 0.19
10 51 0.65
11 3 0.04
12 4 0.05
13 5 0.06
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (10 bp):
AATAATAATA
Found at i:712564 original size:13 final size:12
Alignment explanation
Indices: 712543--712642 Score: 110
Period size: 13 Copynumber: 7.8 Consensus size: 12
712533 GATGTGACAT
712543 TAATAATAATAAA
1 TAATAATAAT-AA
*
712556 TACTAATAATAA
1 TAATAATAATAA
*
712568 TTAATGATAATAA
1 -TAATAATAATAA
*
712581 TAATTAATATATAT
1 TAA-TAATA-ATAA
712595 TAATAATAATAAA
1 TAATAATAAT-AA
712608 TAATAATAATAA
1 TAATAATAATAA
712620 CTAATAATAACTAA
1 -TAATAATAA-TAA
712634 TAATAATAA
1 TAATAATAA
712643 CAAGTTTCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
12 9 0.12
13 57 0.76
14 9 0.12
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (12 bp):
TAATAATAATAA
Found at i:712640 original size:16 final size:15
Alignment explanation
Indices: 712543--712642 Score: 110
Period size: 16 Copynumber: 6.2 Consensus size: 15
712533 GATGTGACAT
*
712543 TAATAATAATAAATAC
1 TAATAATAAT-AATAA
*
712559 TAATAATAATTAATGA
1 TAATAATAA-TAATAA
712575 TAATAATAATTAATATA
1 TAATAATAA-TAATA-A
*
712592 TATTAATAATAATAAA
1 TAATAATAATAAT-AA
712608 TAATAATAATAACTAA
1 TAATAATAATAA-TAA
712624 TAATAACTAATAATAA
1 TAATAA-TAATAATAA
712640 TAA
1 TAA
712643 CAAGTTTCAG
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
16 56 0.76
17 18 0.24
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (15 bp):
TAATAATAATAATAA
Found at i:714254 original size:5 final size:5
Alignment explanation
Indices: 714240--714307 Score: 61
Period size: 5 Copynumber: 13.6 Consensus size: 5
714230 TCTTTTTTAT
* *
714240 TTTTC ATTTTC TTTTC TTTTC TTTTC TTTTC TCTTT- TTTTA TTTT- TATTC
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC T-TTTC TTTTC TTTTC TTTTC
*
714290 ATTTTC TCTT- TTTTC TTT
1 -TTTTC TTTTC TTTTC TTT
714308 AGGTGTAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
4 9 0.17
5 32 0.60
6 12 0.23
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:714266 original size:15 final size:14
Alignment explanation
Indices: 714230--714307 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
714220 TGAGTTTTCA
*
714230 TCTTTT-TTATTTT
1 TCTTTTCTTTTTTT
714243 TCATTTTCTTTTCTTT
1 TC-TTTTCTTTT-TTT
714259 TCTTTTCTTTTCTCTT
1 TCTTTTCTTTT-T-TT
* *
714275 T-TTTTATTTTTAT
1 TCTTTTCTTTTTTT
*
714288 TCATTTTCTCTTTTT
1 TC-TTTTCTTTTTTT
714303 TCTTT
1 TCTTT
714308 AGGTGTAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
13 4 0.08
14 8 0.15
15 33 0.62
16 8 0.15
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:714283 original size:42 final size:43
Alignment explanation
Indices: 714224--714307 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
714214 CCGTTTTGAG
*
714224 TTTTCATCTTTTTTA-TTT-TTCATTTTCTTTTCTTTTCTTTTC
1 TTTTCATCTTTTTTATTTTATTCATTTTCTCTT-TTTTCTTTTC
714266 TTTTC-TCTTTTTTTATTTTTATTCATTTTCTCTTTTTTCTTT
1 TTTTCATC-TTTTTTA-TTTTATTCATTTTCTCTTTTTTCTTT
714308 AGGTGTAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
41 2 0.05
42 12 0.32
44 11 0.30
45 12 0.32
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.77
Consensus pattern (43 bp):
TTTTCATCTTTTTTATTTTATTCATTTTCTCTTTTTTCTTTTC
Found at i:714490 original size:41 final size:42
Alignment explanation
Indices: 714413--714497 Score: 127
Period size: 41 Copynumber: 2.0 Consensus size: 42
714403 ATCGAATTAA
*
714413 ACGGGGACGAGGAAAAACCGTTTATGCTAAACGGGGATGGGG
1 ACGGGGACGAGGAAAAACCATTTATGCTAAACGGGGATGGGG
* * *
714455 ACGGGGACG-GGGAAAACCATTTATGTTAAATGGGGATGGGG
1 ACGGGGACGAGGAAAAACCATTTATGCTAAACGGGGATGGGG
714496 AC
1 AC
714498 AAGTTTAGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 30 0.77
42 9 0.23
ACGTcount: A:0.31, C:0.13, G:0.40, T:0.16
Consensus pattern (42 bp):
ACGGGGACGAGGAAAAACCATTTATGCTAAACGGGGATGGGG
Found at i:714559 original size:12 final size:12
Alignment explanation
Indices: 714511--714559 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
714501 TTTAGTAATC
*
714511 CCCGCCCCGATTA
1 CCCGACCCGA-TA
*
714524 CCCGACCCAATA
1 CCCGACCCGATA
*
714536 CCCGGCCCGATA
1 CCCGACCCGATA
*
714548 CCCGACCTGATA
1 CCCGACCCGATA
714560 AATATTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 22 0.73
13 8 0.27
ACGTcount: A:0.22, C:0.49, G:0.16, T:0.12
Consensus pattern (12 bp):
CCCGACCCGATA
Found at i:714658 original size:17 final size:17
Alignment explanation
Indices: 714605--714661 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
714595 AATAAATTTA
*
714605 ATTTAAATTAAATATAT
1 ATTTAATTTAAATATAT
* *
714622 ATATATATATAATATTTATAT
1 ATTTA-ATTTAA-A--TATAT
714643 ATTTAATTTAAATATAT
1 ATTTAATTTAAATATAT
714660 AT
1 AT
714662 ACCTGGCCCG
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
17 11 0.35
18 4 0.13
19 2 0.06
20 5 0.16
21 9 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATTTAAATATAT
Found at i:715356 original size:13 final size:13
Alignment explanation
Indices: 715338--715371 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
715328 GTCATAAATC
715338 TATGACGTGCATT
1 TATGACGTGCATT
*
715351 TATGACGCGCATT
1 TATGACGTGCATT
*
715364 AATGACGT
1 TATGACGT
715372 TCTTTGAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (13 bp):
TATGACGTGCATT
Found at i:715453 original size:98 final size:86
Alignment explanation
Indices: 715348--715643 Score: 331
Period size: 85 Copynumber: 3.5 Consensus size: 86
715338 TATGACGTGC
* * * * *
715348 ATTTATGACGCGCAT-TAATGACGTT-CTTTGAGTGTCATTGAAGCCTCCA-TCATAAATTAAGA
1 ATTTATGACACGCATGT-ATGACCTTACATTGAGCGTCATTAAAGCC-CCAGTCATAAATTAAGA
715410 TGACACACATTTGTGAGTCATAA
64 TGACACACATTTGTGAGTCATAA
*
715433 ATTTATGACACGCATGTATGA-CTTACATTGCGCGTCATTAAAGCCCCAGTCATAAATTAAGATG
1 ATTTATGACACGCATGTATGACCTTACATTGAGCGTCATTAAAGCCCCAGTCATAAATTAAGATG
* *
715497 CCACACATTTGTGCGTCATAA
66 ACACACATTTGTGAGTCATAA
* *
715518 ATTTATGACACGCATGTATGA-CTTACATTGCGCGTCATTGAAGTCCCC-GTCATAAATCT--GC
1 ATTTATGACACGCATGTATGACCTTACATTGAGCGTCATTAAAG-CCCCAGTCATAAAT-TAAG-
* * *
715579 TTGACATACATTTGTGTGTCATAA
63 ATGACACACATTTGTGAGTCATAA
* * * *
715603 ATTTATGACACGCATATTTGA-CTTACATTGTGTGTCATTAA
1 ATTTATGACACGCATGTATGACCTTACATTGAGCGTCATTAA
715644 TGATCACGTC
Statistics
Matches: 187, Mismatches: 18, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
84 6 0.03
85 175 0.94
86 6 0.03
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (86 bp):
ATTTATGACACGCATGTATGACCTTACATTGAGCGTCATTAAAGCCCCAGTCATAAATTAAGATG
ACACACATTTGTGAGTCATAA
Found at i:715491 original size:85 final size:85
Alignment explanation
Indices: 715381--715643 Score: 363
Period size: 85 Copynumber: 3.1 Consensus size: 85
715371 TTCTTTGAGT
*
715381 GTCATTGAAGCCTCCA-TCATAAATTAAGATGACACACATTTGTGAGTCATAAATTTATGACACG
1 GTCATTAAAGCC-CCAGTCATAAATTAAGATGACACACATTTGTGAGTCATAAATTTATGACACG
715445 CATGTATGACTTACATTGCGC
65 CATGTATGACTTACATTGCGC
* *
715466 GTCATTAAAGCCCCAGTCATAAATTAAGATGCCACACATTTGTGCGTCATAAATTTATGACACGC
1 GTCATTAAAGCCCCAGTCATAAATTAAGATGACACACATTTGTGAGTCATAAATTTATGACACGC
715531 ATGTATGACTTACATTGCGC
66 ATGTATGACTTACATTGCGC
* * * *
715551 GTCATTGAAGTCCCC-GTCATAAATCT--GCTTGACATACATTTGTGTGTCATAAATTTATGACA
1 GTCATTAAAG-CCCCAGTCATAAAT-TAAG-ATGACACACATTTGTGAGTCATAAATTTATGACA
* * * *
715613 CGCATATTTGACTTACATTGTGT
63 CGCATGTATGACTTACATTGCGC
715636 GTCATTAA
1 GTCATTAA
715644 TGATCACGTC
Statistics
Matches: 161, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
84 4 0.02
85 152 0.94
86 5 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (85 bp):
GTCATTAAAGCCCCAGTCATAAATTAAGATGACACACATTTGTGAGTCATAAATTTATGACACGC
ATGTATGACTTACATTGCGC
Found at i:717788 original size:25 final size:25
Alignment explanation
Indices: 717720--717795 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
717710 TTTCCTTTGT
717720 GGTGTCCCTTCTCCTTTACCCTCTTC
1 GGTGTCCCTTCTCCTTT-CCCTCTTC
* * * * * *
717746 -CTTTTCTTTCTCTTTTTCCGTCTTC
1 GGTGTCCCTTCTC-CTTTCCCTCTTC
717771 GGTGTCCCTTCTCCTTTCTCCTCTT
1 GGTGTCCCTTCTCCTTTC-CCTCTT
717796 ATTTTTCAAC
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
25 19 0.54
26 16 0.46
ACGTcount: A:0.01, C:0.38, G:0.09, T:0.51
Consensus pattern (25 bp):
GGTGTCCCTTCTCCTTTCCCTCTTC
Found at i:721656 original size:15 final size:15
Alignment explanation
Indices: 721630--721668 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
721620 GATGCTTTCT
*
721630 TTTTCTTTCTTTGACG
1 TTTTC-TTCTTTGACA
721646 TTTTCTTCTTTGACA
1 TTTTCTTCTTTGACA
721661 TTTTCTTC
1 TTTTCTTC
721669 GTAGATGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.08, C:0.21, G:0.08, T:0.64
Consensus pattern (15 bp):
TTTTCTTCTTTGACA
Found at i:727820 original size:3 final size:3
Alignment explanation
Indices: 727812--727842 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
727802 CACTATCGTT
727812 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
727843 ATACAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:729471 original size:2 final size:2
Alignment explanation
Indices: 729466--729506 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
729456 GGGTTTAAAG
729466 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
729507 TACGATCCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:733565 original size:2 final size:2
Alignment explanation
Indices: 733558--733589 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
733548 ATTTAAATAA
*
733558 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
733590 GATCTAGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:736667 original size:18 final size:18
Alignment explanation
Indices: 736644--736684 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
736634 TATCAAGCTT
736644 ACATGGCATCGCATGCTG
1 ACATGGCATCGCATGCTG
736662 ACATGGCATCGCATGCTG
1 ACATGGCATCGCATGCTG
736680 ACATG
1 ACATG
736685 ACAACTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (18 bp):
ACATGGCATCGCATGCTG
Found at i:738847 original size:3 final size:3
Alignment explanation
Indices: 738839--738877 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
738829 ACATAGGAAC
738839 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
738878 ATGTACTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:747278 original size:14 final size:14
Alignment explanation
Indices: 747259--747285 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
747249 CTCATCAACT
747259 TTTTTTTTATTTAC
1 TTTTTTTTATTTAC
747273 TTTTTTTTATTTA
1 TTTTTTTTATTTA
747286 AATTAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTTTATTTAC
Found at i:755149 original size:85 final size:85
Alignment explanation
Indices: 755049--755215 Score: 214
Period size: 85 Copynumber: 2.0 Consensus size: 85
755039 ATACAATCAC
* * * *
755049 GACACACGAATGTGTGTCATATT-TTTTAATGACGTGTGCTTCAATGACACGA-AATGTA-AGTC
1 GACACACAAATGTGTGTCATATTCATTT-ATGACGGGGGCTTCAATGACAC-ACAATG-AGAGTC
*
755111 ATAAATGCGCATCATAAATTTAT
63 ATAAATGCACATCATAAATTTAT
* *
755134 GACACACAAATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACACAATGAGCGTCATA
1 GACACACAAATGTGTGTCATATTCATTTATGACGGGGGCTTCAATGACACACAATGAGAGTCATA
*
755199 AATGCACGTCATAAATT
66 AATGCACATCATAAATT
755216 CATGTCATAA
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 2 0.03
85 66 0.93
86 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (85 bp):
GACACACAAATGTGTGTCATATTCATTTATGACGGGGGCTTCAATGACACACAATGAGAGTCATA
AATGCACATCATAAATTTAT
Found at i:755208 original size:13 final size:13
Alignment explanation
Indices: 755192--755237 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
755182 ACACAATGAG
755192 CGTCATAAATGCA
1 CGTCATAAATGCA
*
755205 CGTCATAAATTCA
1 CGTCATAAATGCA
* *
755218 TGTCATAAATGCG
1 CGTCATAAATGCA
755231 CGTCATA
1 CGTCATA
755238 GATGAGGCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (13 bp):
CGTCATAAATGCA
Found at i:761634 original size:24 final size:25
Alignment explanation
Indices: 761593--761648 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
761583 TGAAAAGATT
* *
761593 TAATAAAATAAAATAAATAATAATA
1 TAATAAAATAAAAAAAATAATAAAA
761618 -AATAAAA-AAAGAAAAATAATAAAA
1 TAATAAAATAAA-AAAAATAATAAAA
761642 TAATAAA
1 TAATAAA
761649 TTATAATAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 3 0.11
24 18 0.67
25 6 0.22
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (25 bp):
TAATAAAATAAAAAAAATAATAAAA
Found at i:761715 original size:18 final size:18
Alignment explanation
Indices: 761694--761734 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
761684 GTTTTTTTAA
*
761694 AAATAAAAGATAACAATT
1 AAATAAAAGAAAACAATT
761712 AAATAAAAGAAAACAATT
1 AAATAAAAGAAAACAATT
761730 AAATA
1 AAATA
761735 CATAATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.20
Consensus pattern (18 bp):
AAATAAAAGAAAACAATT
Found at i:762516 original size:76 final size:71
Alignment explanation
Indices: 762356--762538 Score: 206
Period size: 76 Copynumber: 2.5 Consensus size: 71
762346 TCTTAAATCC
* * * * * *
762356 TAATTAAAACACTTAAAA-CTCTTTAAACTAAAATACCTAAAAAATAATATTTAAAATAATATTC
1 TAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAAAATAAAATTAAAAACAATATCC
*
762420 TAAATCA
65 TAAAACA
*
762427 TGATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAAAAACAAT
1 TAATTAAAATACTAAAACCTATTTAAACTAAAATACCT--AA-AAA-ATAAAAT-TAAAAACAAT
*
762492 ATCCTAAAACT
61 ATCCTAAAACA
* *
762503 TAATTAAATTACTAAAGCCTATTTAAACTAAAATAC
1 TAATTAAAATACTAAAACCTATTTAAACTAAAATAC
762539 AAAGATAAAA
Statistics
Matches: 94, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
70 5 0.05
71 29 0.31
73 2 0.02
74 3 0.03
75 6 0.06
76 49 0.52
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (71 bp):
TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAAAATAAAATTAAAAACAATATCCT
AAAACA
Found at i:762562 original size:76 final size:77
Alignment explanation
Indices: 762356--762562 Score: 202
Period size: 76 Copynumber: 2.8 Consensus size: 77
762346 TCTTAAATCC
* * *
762356 TAATTAAAACACTTAAAA-CTCTTTAAACTAAAATACCT---A-AAAA-ATAATATTT-AAAATA
1 TAATTAAAATAC-TAAAACCTATTTAAACTAAAATACCTAAAATAAAATATAATATTTAAAAACA
* *
762414 ATATTCTAAATCA
65 ATATCCTAAAACA
* * *
762427 TGATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATA-AA-ATATAAAAACA
1 TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAATAAA-ATATAATATTTAAAAACA
*
762490 ATATCCTAAAACT
65 ATATCCTAAAACA
* * *
762503 TAATTAAATTACTAAAGCCTATTTAAACTAAAATA-C-AAAGATAAAATATAATGTTTAAAA
1 TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAA-ATAAAATATAATATTTAAAA
762563 TATGATCCTA
Statistics
Matches: 111, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
70 5 0.05
71 29 0.26
74 7 0.06
75 13 0.12
76 56 0.50
77 1 0.01
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (77 bp):
TAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAATAAAATATAATATTTAAAAACAA
TATCCTAAAACA
Found at i:769798 original size:15 final size:15
Alignment explanation
Indices: 769774--769846 Score: 94
Period size: 15 Copynumber: 4.9 Consensus size: 15
769764 TTGGTTTTCC
769774 GGAAAATGAATTACT
1 GGAAAATGAATTACT
** *
769789 GGAATTTGAATTATT
1 GGAAAATGAATTACT
769804 GGAAAATGAATTACT
1 GGAAAATGAATTACT
**
769819 GGAATTTGAATT-CT
1 GGAAAATGAATTACT
769833 GGAAAATGAATTAC
1 GGAAAATGAATTAC
769847 ATTTCTGGAA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
14 12 0.26
15 35 0.74
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (15 bp):
GGAAAATGAATTACT
Found at i:769845 original size:29 final size:30
Alignment explanation
Indices: 769774--769846 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
769764 TTGGTTTTCC
*
769774 GGAAAATGAATTACTGGAATTTGAATTATT
1 GGAAAATGAATTACTGGAATTTGAATTACT
769804 GGAAAATGAATTACTGGAATTTGAATT-CT
1 GGAAAATGAATTACTGGAATTTGAATTACT
769833 GGAAAATGAATTAC
1 GGAAAATGAATTAC
769847 ATTTCTGGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
29 15 0.36
30 27 0.64
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (30 bp):
GGAAAATGAATTACTGGAATTTGAATTACT
Found at i:770039 original size:49 final size:50
Alignment explanation
Indices: 769942--770040 Score: 114
Period size: 49 Copynumber: 2.0 Consensus size: 50
769932 TACAAATATT
*
769942 AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATTATTTTA
1 AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATAATTTTA
* * * *
769992 AAATATTA-AAATAAT-TTATTTATTATTAAATA-TTATTTTTATAATTTTA
1 AAATATAATAAATAATATTATTTATCA-TAAA-ACTTAATATTATAATTTTA
770041 TTAATAAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
48 9 0.21
49 25 0.60
50 8 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (50 bp):
AAATATAATAAATAATATTATTTATCATAAAACTTAATATTATAATTTTA
Found at i:770210 original size:29 final size:30
Alignment explanation
Indices: 770175--770246 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
770165 CTTTACTAAA
*
770175 ATATTATTTAAATATATAAATAA-TATTAT
1 ATATTATTTAAATATATAAAAAATTATTAT
770204 -TCATTATTT-AATATATAAAAAATTATTAT
1 AT-ATTATTTAAATATATAAAAAATTATTAT
*
770233 ATATTATTAAAATA
1 ATATTATTTAAATA
770247 AAAATATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
28 13 0.35
29 19 0.51
30 5 0.14
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (30 bp):
ATATTATTTAAATATATAAAAAATTATTAT
Found at i:770247 original size:26 final size:27
Alignment explanation
Indices: 770175--770278 Score: 88
Period size: 29 Copynumber: 3.6 Consensus size: 27
770165 CTTTACTAAA
770175 ATATTATTTAAATATATAAATAATATTAT
1 ATATTATTTAAATATA-AAA-AATATTAT
770204 -TCATTATTTAATATATAAAAAATTATTAT
1 AT-ATTATTTAA-ATATAAAAAA-TATTAT
* *
770233 ATATTATTAAAATAAAAATATAATATCT-T
1 ATATTATTTAAATATAAA-A-AATAT-TAT
770262 ATATTA-TTATAATATAA
1 ATATTATTTA-AATATAA
770279 TTGATTATTT
Statistics
Matches: 63, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
28 11 0.17
29 43 0.68
30 9 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (27 bp):
ATATTATTTAAATATAAAAAATATTAT
Found at i:770316 original size:22 final size:23
Alignment explanation
Indices: 770291--770334 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
770281 GATTATTTTA
770291 TATAATATTAAAAATA-TAATAT
1 TATAATATTAAAAATATTAATAT
* *
770313 TATATTATTATAAATATTAATA
1 TATAATATTAAAAATATTAATA
770335 AATAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAATATTAAAAATATTAATAT
Found at i:770584 original size:42 final size:42
Alignment explanation
Indices: 770526--770645 Score: 195
Period size: 42 Copynumber: 2.9 Consensus size: 42
770516 ATGAATTACA
*
770526 TTCCGGAAAACCAATTACGTGAAACAAACACGGGAAAACATT
1 TTCCGGAAAACCAATTACGTGAAACAAACACGAGAAAACATT
* *
770568 TTTCGGAAAACGAATTACGTGAAACAAACACGAGAAAACATT
1 TTCCGGAAAACCAATTACGTGAAACAAACACGAGAAAACATT
* *
770610 TTCCGAAAAACTAATTACGTGAAACAAACACGAGAA
1 TTCCGGAAAACCAATTACGTGAAACAAACACGAGAA
770646 TTCAGGGAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.17
Consensus pattern (42 bp):
TTCCGGAAAACCAATTACGTGAAACAAACACGAGAAAACATT
Found at i:772058 original size:12 final size:12
Alignment explanation
Indices: 772041--772068 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
772031 TAAGAAGAAC
772041 TTAAAAATATCT
1 TTAAAAATATCT
772053 TTAAAAATATCT
1 TTAAAAATATCT
772065 TTAA
1 TTAA
772069 GCATGACGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (12 bp):
TTAAAAATATCT
Found at i:776714 original size:22 final size:22
Alignment explanation
Indices: 776676--776720 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
776666 TTTGAATGGG
* *
776676 TGAATGGGTACTGATACCTCTA
1 TGAATGGGTACTAATACCCCTA
776698 TGAATGGGTA-TCAATACCCCTA
1 TGAATGGGTACT-AATACCCCTA
776720 T
1 T
776721 AAAGGCTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (22 bp):
TGAATGGGTACTAATACCCCTA
Found at i:777135 original size:30 final size:30
Alignment explanation
Indices: 777065--777137 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
777055 AATGGATTTA
* *
777065 TTTAGTGACCAAATTATAAATTTGATAAAG
1 TTTAGTGACCAAAGTATAAATTTGAAAAAG
777095 TTGT-GTGACCAAAGTATAAACTTT-AAAAAG
1 TT-TAGTGACCAAAGTATAAA-TTTGAAAAAG
*
777125 TTTAGGGACCAAA
1 TTTAGTGACCAAA
777138 ATGTAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 1 0.03
30 32 0.86
31 4 0.11
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (30 bp):
TTTAGTGACCAAAGTATAAATTTGAAAAAG
Found at i:783191 original size:30 final size:30
Alignment explanation
Indices: 783135--783192 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
783125 GATTTATTTA
* *
783135 GTGACCAAATTATAAATTTAGTAAAGTTGG
1 GTGACCAAAGTATAAATTTAGAAAAGTTGG
783165 GTGACCAAAGTATAAACTTT-GAAAAGTT
1 GTGACCAAAGTATAAA-TTTAGAAAAGTT
783193 TAGGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (30 bp):
GTGACCAAAGTATAAATTTAGAAAAGTTGG
Found at i:783201 original size:30 final size:30
Alignment explanation
Indices: 783131--783203 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
783121 AATGGATTTA
* * *
783131 TTTAGTGACCAAATTATAAATTTAGTAAAG
1 TTTAGGGACCAAAGTATAAATTTAGAAAAG
*
783161 -TTGGGTGACCAAAGTATAAACTTT-GAAAAG
1 TTTAGG-GACCAAAGTATAAA-TTTAGAAAAG
783191 TTTAGGGACCAAA
1 TTTAGGGACCAAA
783204 ATGTAATTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 3 0.09
30 25 0.71
31 7 0.20
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (30 bp):
TTTAGGGACCAAAGTATAAATTTAGAAAAG
Found at i:784217 original size:30 final size:30
Alignment explanation
Indices: 784159--784225 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
784149 ATGCCTTATA
* *
784159 AAAATTTAGGGACCATTTTGCAATTTTT-G
1 AAAAGTTAGGGACCAATTTGCAATTTTTGG
784188 AAAAGTTAGGAGACCAATTTGACAA-TTTTGG
1 AAAAGTTAGG-GACCAATTTG-CAATTTTTGG
784219 AAAAGTT
1 AAAAGTT
784226 GTGAATGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 9 0.27
30 13 0.39
31 11 0.33
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (30 bp):
AAAAGTTAGGGACCAATTTGCAATTTTTGG
Found at i:784222 original size:31 final size:29
Alignment explanation
Indices: 784159--784225 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 29
784149 ATGCCTTATA
* * *
784159 AAAATTTAGGGACCATTTTGCAATTTTTG
1 AAAAGTTAGGGACCAATTTGCAATTTTGG
784188 AAAAGTTAGGAGACCAATTTGACAATTTTGG
1 AAAAGTTAGG-GACCAATTTG-CAATTTTGG
784219 AAAAGTT
1 AAAAGTT
784226 GTGAATGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 9 0.27
30 9 0.27
31 15 0.45
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.34
Consensus pattern (29 bp):
AAAAGTTAGGGACCAATTTGCAATTTTGG
Found at i:785443 original size:45 final size:46
Alignment explanation
Indices: 785348--785445 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 46
785338 GTAACCATGC
* *
785348 AAATTAGCTTACAAGCTTATTGGATAAAAATGTAAGTATATTGGTA
1 AAATAAGCTTACAAGCTTATTGGATAAAAATGTAAGTATATTGATA
* *
785394 AAATAAGCTTACGAGCTTA-TGGA-ATAAATGGTAAGTATATTGATA
1 AAATAAGCTTACAAGCTTATTGGATAAAAAT-GTAAGTATATTGATA
785439 AAATAAG
1 AAATAAG
785446 AAATTTTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
44 5 0.11
45 25 0.53
46 17 0.36
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (46 bp):
AAATAAGCTTACAAGCTTATTGGATAAAAATGTAAGTATATTGATA
Found at i:785850 original size:12 final size:12
Alignment explanation
Indices: 785833--785887 Score: 69
Period size: 12 Copynumber: 4.8 Consensus size: 12
785823 TTTGATGAAA
*
785833 TTATTGTAGCAG
1 TTATTGTAGTAG
785845 TTATTGTAGTAG
1 TTATTGTAGTAG
*
785857 -TATTGTAGAAG
1 TTATTGTAGTAG
*
785868 TTACTGTAGTAG
1 TTATTGTAGTAG
785880 -TATTGTAG
1 TTATTGTAG
785888 AAGTACATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
11 17 0.46
12 20 0.54
ACGTcount: A:0.27, C:0.04, G:0.25, T:0.44
Consensus pattern (12 bp):
TTATTGTAGTAG
Found at i:785860 original size:23 final size:23
Alignment explanation
Indices: 785834--785891 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
785824 TTGATGAAAT
* *
785834 TATTGTAGCAGTTATTGTAGTAG
1 TATTGTAGAAGTTACTGTAGTAG
785857 TATTGTAGAAGTTACTGTAGTAG
1 TATTGTAGAAGTTACTGTAGTAG
785880 TATTGTAGAAGT
1 TATTGTAGAAGT
785892 ACATCGATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.41
Consensus pattern (23 bp):
TATTGTAGAAGTTACTGTAGTAG
Found at i:785862 original size:11 final size:11
Alignment explanation
Indices: 785834--785892 Score: 64
Period size: 11 Copynumber: 5.2 Consensus size: 11
785824 TTGATGAAAT
*
785834 TATTGTAGCAG
1 TATTGTAGAAG
*
785845 TTATTGTAGTAG
1 -TATTGTAGAAG
785857 TATTGTAGAAG
1 TATTGTAGAAG
* *
785868 TTACTGTAGTAG
1 -TATTGTAGAAG
785880 TATTGTAGAAG
1 TATTGTAGAAG
785891 TA
1 TA
785893 CATCGATACA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
11 21 0.52
12 19 0.47
ACGTcount: A:0.31, C:0.03, G:0.25, T:0.41
Consensus pattern (11 bp):
TATTGTAGAAG
Found at i:786228 original size:22 final size:22
Alignment explanation
Indices: 786197--786253 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
786187 TGGGTGTTAC
786197 AGTATCGGTACCATAGTATAGA
1 AGTATCGGTACCATAGTATAGA
*
786219 AGTATTGGTACCATAGTATAGA
1 AGTATCGGTACCATAGTATAGA
*
786241 AATATCGGTACCA
1 AGTATCGGTACCA
786254 GGGTAGTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (22 bp):
AGTATCGGTACCATAGTATAGA
Found at i:786405 original size:46 final size:45
Alignment explanation
Indices: 786343--786500 Score: 226
Period size: 46 Copynumber: 3.4 Consensus size: 45
786333 GAATATTATT
* *
786343 AAAGTATGCCATAACTAAAATACATGACGGATGCATTAAGGCATAA
1 AAAGGATGCCATAACTAAAATACATGACGGATGCATTAAGGCAT-G
* *
786389 AAAGGATGTCATAACTAAAATTCATGACCGGATGCATTAAGGCATG
1 AAAGGATGCCATAACTAAAATACATGA-CGGATGCATTAAGGCATG
* * *
786435 AAAGGATGCCATAACTAAATTGCATGAACGAATGCATTAAGGCATG
1 AAAGGATGCCATAACTAAAATACATG-ACGGATGCATTAAGGCATG
786481 AAAGGATGCCATAACTAAAA
1 AAAGGATGCCATAACTAAAA
786501 AGCAAGAAAG
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
46 83 0.82
47 18 0.18
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.22
Consensus pattern (45 bp):
AAAGGATGCCATAACTAAAATACATGACGGATGCATTAAGGCATG
Found at i:786441 original size:20 final size:20
Alignment explanation
Indices: 786418--786489 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 20
786408 ATTCATGACC
786418 GGATGCATTAAGGCATGAAA
1 GGATGCATTAAGGCATGAAA
* *
786438 GGATGCCATAACTAAATTGCATGAAC
1 GGATG-CAT---T-AA-GGCATGAAA
*
786464 GAATGCATTAAGGCATGAAA
1 GGATGCATTAAGGCATGAAA
786484 GGATGC
1 GGATGC
786490 CATAACTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
20 17 0.43
21 5 0.12
22 1 0.03
24 1 0.03
25 5 0.12
26 11 0.28
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (20 bp):
GGATGCATTAAGGCATGAAA
Found at i:786516 original size:46 final size:46
Alignment explanation
Indices: 786343--786520 Score: 225
Period size: 46 Copynumber: 3.9 Consensus size: 46
786333 GAATATTATT
* *
786343 AAAGTATGCCATAACTAAAATA-CATG-ACGGATGCATTAAGGCATAA
1 AAAGGATGCCATAACTAAAA-AGCATGAACGGATGCATTAAGGCAT-G
* ** *
786389 AAAGGATGTCATAACTAAAATTCATGACCGGATGCATTAAGGCATG
1 AAAGGATGCCATAACTAAAAAGCATGAACGGATGCATTAAGGCATG
** *
786435 AAAGGATGCCATAACTAAATTGCATGAACGAATGCATTAAGGCATG
1 AAAGGATGCCATAACTAAAAAGCATGAACGGATGCATTAAGGCATG
* *
786481 AAAGGATGCCATAACTAAAAAGCAAGAAAGGATGCATTAA
1 AAAGGATGCCATAACTAAAAAGCATGAACGGATGCATTAA
786521 TGCAATGAGA
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 98 0.85
47 17 0.15
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (46 bp):
AAAGGATGCCATAACTAAAAAGCATGAACGGATGCATTAAGGCATG
Found at i:795469 original size:40 final size:40
Alignment explanation
Indices: 795425--795503 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
795415 TGGGATGTTC
* * *
795425 ATGAA-AATGGTTTTATGTTTGTTTAATTAAATGAATGAAT
1 ATGAACAA-GGTTTTATGCTCGTTTAATAAAATGAATGAAT
*
795465 ATGAACAAGGTTTTCTGCTCGTTTAATAAAATGAATGAA
1 ATGAACAAGGTTTTATGCTCGTTTAATAAAATGAATGAA
795504 CACAAACAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.94
41 2 0.06
ACGTcount: A:0.38, C:0.05, G:0.18, T:0.39
Consensus pattern (40 bp):
ATGAACAAGGTTTTATGCTCGTTTAATAAAATGAATGAAT
Found at i:796853 original size:60 final size:60
Alignment explanation
Indices: 796779--796906 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 60
796769 ACAATAGAAT
* * * * *
796779 GACCATTTTCTAACTTTTAATAGTCCAAAGACTCAACAAA-AAACCACCCTATAGTTGATG
1 GACCATTTTATAACTTTTAATAATACAAAGACTCAACAAAGAAA-CACCCTATAATTGAGG
* * *
796839 GACCATTTTATAACTTTTAATAATATAGAGACTCAACAAAGTAACACCCTATAATTGAGG
1 GACCATTTTATAACTTTTAATAATACAAAGACTCAACAAAGAAACACCCTATAATTGAGG
796899 GACCATTT
1 GACCATTT
796907 GAATTCTTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
60 57 0.97
61 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (60 bp):
GACCATTTTATAACTTTTAATAATACAAAGACTCAACAAAGAAACACCCTATAATTGAGG
Found at i:798567 original size:35 final size:34
Alignment explanation
Indices: 798527--798619 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 34
798517 GTATACAACA
* * *
798527 AATTACCAGCAATGACTGAACCTGCCAGAGATAGG
1 AATTACCAGCAGTGACTGAACCTGCCACACA-AGG
* *
798562 AATTACCAGTCGGTG-CTGAA-CT--TACACAAGG
1 AATTACCAG-CAGTGACTGAACCTGCCACACAAGG
798593 AATTACCAGCAGTGACTGAACCTGCCA
1 AATTACCAGCAGTGACTGAACCTGCCA
798620 AGGTCTTCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
30 4 0.09
31 17 0.37
32 5 0.11
34 3 0.07
35 14 0.30
36 3 0.07
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.19
Consensus pattern (34 bp):
AATTACCAGCAGTGACTGAACCTGCCACACAAGG
Found at i:798599 original size:66 final size:66
Alignment explanation
Indices: 798493--798619 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 66
798483 TAGGTCCATA
*
798493 AGGAATTACCAGTCAGCGCTGAACGTATACAACAAATTACCAGCAATGACTGAACCTGCCAGAGA
1 AGGAATTACCAGTCAGCGCTGAACGTACACAACAAATTACCAGCAATGACTGAACCTGCCAGAGA
798558 T
66 T
* * * ** *
798559 AGGAATTACCAGTCGGTGCTGAACTTACACAAGGAATTACCAGCAGTGACTGAACCTGCCA
1 AGGAATTACCAGTCAGCGCTGAACGTACACAACAAATTACCAGCAATGACTGAACCTGCCA
798620 AGGTCTTCAT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.19
Consensus pattern (66 bp):
AGGAATTACCAGTCAGCGCTGAACGTACACAACAAATTACCAGCAATGACTGAACCTGCCAGAGA
T
Found at i:798612 original size:31 final size:31
Alignment explanation
Indices: 798492--798613 Score: 86
Period size: 31 Copynumber: 3.8 Consensus size: 31
798482 TTAGGTCCAT
* * *
798492 AAGGAATTACCAGTCAGCGCTGAACGTATAC
1 AAGGAATTACCAGTCAGTGCTGAACTTACAC
** * * * *
798523 AACAAATTACCAG-CAATGACTGAACCTGCCAGAG
1 AAGGAATTACCAGTCAGTG-CTGAA-CT--TACAC
*
798557 ATAGGAATTACCAGTCGGTGCTGAACTTACAC
1 A-AGGAATTACCAGTCAGTGCTGAACTTACAC
798589 AAGGAATTACCAG-CAGTGACTGAAC
1 AAGGAATTACCAGTCAGTG-CTGAAC
798614 CTGCCAAGGT
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
30 7 0.10
31 34 0.50
32 4 0.06
34 5 0.07
35 15 0.22
36 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (31 bp):
AAGGAATTACCAGTCAGTGCTGAACTTACAC
Found at i:798712 original size:11 final size:12
Alignment explanation
Indices: 798685--798728 Score: 88
Period size: 12 Copynumber: 3.7 Consensus size: 12
798675 AAGAGATATA
798685 AAAAATCAGAAC
1 AAAAATCAGAAC
798697 AAAAATCAGAAC
1 AAAAATCAGAAC
798709 AAAAATCAGAAC
1 AAAAATCAGAAC
798721 AAAAATCA
1 AAAAATCA
798729 AAGAAAACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.68, C:0.16, G:0.07, T:0.09
Consensus pattern (12 bp):
AAAAATCAGAAC
Found at i:805459 original size:22 final size:22
Alignment explanation
Indices: 805434--805506 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
805424 AATCTTATTT
805434 TACCAATATACTTACCATTTAA
1 TACCAATATACTTACCATTTAA
*
805456 TACC-ATA-AGCTCGTAAGCTTATTT--
1 TACCAATATA-CT--T-A-C-CATTTAA
805480 TACCAATATACTTACCATTTAA
1 TACCAATATACTTACCATTTAA
805502 TACCA
1 TACCA
805507 TAACCTCGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 20
0.64 0.03 0.33
Matches are distributed among these distances:
20 5 0.13
21 6 0.15
22 10 0.26
23 2 0.05
24 5 0.13
25 6 0.15
26 5 0.13
ACGTcount: A:0.37, C:0.23, G:0.04, T:0.36
Consensus pattern (22 bp):
TACCAATATACTTACCATTTAA
Found at i:805470 original size:46 final size:46
Alignment explanation
Indices: 805399--805615 Score: 282
Period size: 46 Copynumber: 4.8 Consensus size: 46
805389 GATAAAATCT
* ** *
805399 CTTACCATTT-ATCCCATAAATTCGTAATCTTATTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
805444 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
805490 CTTACCATTTAATACCATAACCTCGTAAGCTTTTTTTACCAATATA
1 CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
* *
805536 CCTACCATTTAA-ACCCATATGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTAATA-CCATAAGCTCGTAAGCTTATTTTACCAATATA
* * *
805582 CTTGA-CA-TT-ATTCAATAAGCTCGTAAGCCTATTT
1 CTT-ACCATTTAATACCATAAGCTCGTAAGCTTATTT
805616 GCATACTTAC
Statistics
Matches: 153, Mismatches: 15, Indels: 9
0.86 0.08 0.05
Matches are distributed among these distances:
44 20 0.13
45 13 0.08
46 119 0.78
47 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (46 bp):
CTTACCATTTAATACCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:805776 original size:40 final size:40
Alignment explanation
Indices: 805697--805777 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
805687 ATAGGAGTCA
* * * * *
805697 AATATTGCACCGAAGTGCTGAGGTTGAGCTTTGCTCACCT
1 AATAATGCACCGAAGTGCTGAGGTCGAGATTTACCCACCT
*
805737 AATAATGCACCGTAGTGCTGAGGTCGAGATTTACCCACCT
1 AATAATGCACCGAAGTGCTGAGGTCGAGATTTACCCACCT
805777 A
1 A
805778 GTACACCGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (40 bp):
AATAATGCACCGAAGTGCTGAGGTCGAGATTTACCCACCT
Found at i:817527 original size:66 final size:66
Alignment explanation
Indices: 817364--817534 Score: 238
Period size: 65 Copynumber: 2.6 Consensus size: 66
817354 AGTCTATAAA
* * * *
817364 GAATTACCAGTCAGTGCTGAACATATACAAGGAACTACCAGCAACGTATGAACCGACCAGAGATA
1 GAATTACCAGTCAGTGTTGAACCTATACAAGGAATTACCAGCAACGTATAAACCGACCAGAGATA
817429 G
66 G
* * *
817430 GAATTA-CAGTCACTGTTGAACCTATACAAGGAATTACCAGCATCGTCTAAACCTG-CCAGAGAT
1 GAATTACCAGTCAGTGTTGAACCTATACAAGGAATTACCAGCAACGTATAAACC-GACCAGAGAT
817493 AG
65 AG
* *
817495 GAATAACCAGTCGGTGTTGAACCTATACAAGGAATTACCA
1 GAATTACCAGTCAGTGTTGAACCTATACAAGGAATTACCA
817535 CCAGCGATTG
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
65 55 0.59
66 38 0.41
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (66 bp):
GAATTACCAGTCAGTGTTGAACCTATACAAGGAATTACCAGCAACGTATAAACCGACCAGAGATA
G
Found at i:826652 original size:47 final size:45
Alignment explanation
Indices: 826582--826707 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
826572 ATAAAAATCT
* *
826582 CTTACCATTTATCCCATAAGCTCGTCAGCTTATTTTACCAAAATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
826627 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCATTT--ATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* * *
826674 CTTGCCA-TTATTCCGTAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
826708 GCATGGTAAC
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 23 0.32
45 10 0.14
46 2 0.03
47 37 0.51
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:830542 original size:22 final size:22
Alignment explanation
Indices: 830482--830554 Score: 74
Period size: 22 Copynumber: 3.3 Consensus size: 22
830472 GGGAATCGTA
* * *
830482 CCCCCCTGATGGGGAGCCGATT
1 CCCCCTTGAAGGGGAACCGATT
*
830504 CCCCTTTTGAAGGGGAACCGATT
1 CCCC-CTTGAAGGGGAACCGATT
* * *
830527 CCCCCTTGTAGGGGAATCGATA
1 CCCCCTTGAAGGGGAACCGATT
830549 CCCCCT
1 CCCCCT
830555 GAGGGTTCTG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 24 0.57
23 18 0.43
ACGTcount: A:0.18, C:0.34, G:0.26, T:0.22
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCGATT
Found at i:832430 original size:22 final size:21
Alignment explanation
Indices: 832405--832445 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
832395 TTGAATGCTT
832405 TTGGATTGTTT-AACTTTGTTTG
1 TTGGA-TGTTTGAA-TTTGTTTG
832427 TTGGATGTTTGAATTTGTT
1 TTGGATGTTTGAATTTGTT
832446 GGATGGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.15, C:0.02, G:0.24, T:0.59
Consensus pattern (21 bp):
TTGGATGTTTGAATTTGTTTG
Found at i:832728 original size:10 final size:10
Alignment explanation
Indices: 832710--832750 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
832700 AAAGGGGGAG
*
832710 AAGTATTTTA
1 AAGTGTTTTA
832720 AAGTGTTTTA
1 AAGTGTTTTA
832730 AA--GTTTTA
1 AAGTGTTTTA
*
832738 AAGAGTTTTA
1 AAGTGTTTTA
832748 AAG
1 AAG
832751 AGGAGAAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.29
10 20 0.71
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (10 bp):
AAGTGTTTTA
Found at i:832738 original size:18 final size:18
Alignment explanation
Indices: 832715--832750 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
832705 GGGAGAAGTA
*
832715 TTTTAAAGTGTTTTAAAG
1 TTTTAAAGAGTTTTAAAG
832733 TTTTAAAGAGTTTTAAAG
1 TTTTAAAGAGTTTTAAAG
832751 AGGAGAAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (18 bp):
TTTTAAAGAGTTTTAAAG
Found at i:832751 original size:10 final size:10
Alignment explanation
Indices: 832715--832752 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
832705 GGGAGAAGTA
*
832715 TTTTAAAGTG
1 TTTTAAAGAG
832725 TTTT-AA-AG
1 TTTTAAAGAG
832733 TTTTAAAGAG
1 TTTTAAAGAG
832743 TTTTAAAGAG
1 TTTTAAAGAG
832753 GAGAAGTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
8 5 0.20
9 4 0.16
10 16 0.64
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (10 bp):
TTTTAAAGAG
Found at i:834004 original size:65 final size:66
Alignment explanation
Indices: 833900--834037 Score: 179
Period size: 65 Copynumber: 2.1 Consensus size: 66
833890 TAACTCAACA
* * ** * * *
833900 ACCAGCAATGACTGAACCTACTAGAGATAGGAATTACCAGTTGTTGTTTAACCTATA-AATGAAT
1 ACCAGCAATGACTGAACCTACCAGAGATAGGAATTACCAGTCGGAGCTGAACCTATACAAAGAAT
833964 T
66 T
* * *
833965 ACCAGCAATGACTTAACCTGCCAGAGATATGAATTACCAGTCGGAGCTGAACCTATACAAAGAAT
1 ACCAGCAATGACTGAACCTACCAGAGATAGGAATTACCAGTCGGAGCTGAACCTATACAAAGAAT
834030 T
66 T
834031 ACCAGCA
1 ACCAGCA
834038 GCGACTAAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
65 48 0.77
66 14 0.23
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (66 bp):
ACCAGCAATGACTGAACCTACCAGAGATAGGAATTACCAGTCGGAGCTGAACCTATACAAAGAAT
T
Found at i:836347 original size:13 final size:13
Alignment explanation
Indices: 836331--836360 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
836321 TATTATAATA
*
836331 ATTATTTATTATT
1 ATTATTAATTATT
836344 ATTATTAATTATT
1 ATTATTAATTATT
836357 ATTA
1 ATTA
836361 ATTCTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTATTAATTATT
Found at i:836359 original size:16 final size:16
Alignment explanation
Indices: 836320--836360 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
836310 TATATATATG
* *
836320 TTATTATAATAATTAT
1 TTATTATTATAATTAA
*
836336 TTATTATTATTATTAA
1 TTATTATTATAATTAA
836352 TTATTATTA
1 TTATTATTA
836361 ATTCTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTATTATAATTAA
Found at i:836361 original size:10 final size:10
Alignment explanation
Indices: 836329--836372 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
836319 GTTATTATAA
836329 TAATTATTTAT
1 TAATTA-TTAT
836340 T-ATTATTAT
1 TAATTATTAT
836349 TAATTATTAT
1 TAATTATTAT
*
836359 TAATT-CTAT
1 TAATTATTAT
836368 TAATT
1 TAATT
836373 TTTTTTTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 13 0.42
10 17 0.55
11 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TAATTATTAT
Found at i:840958 original size:14 final size:13
Alignment explanation
Indices: 840941--840986 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 13
840931 AAAAAACCAA
840941 AAAAAAAAAGAAGC
1 AAAAAAAAAGAA-C
840955 AAAAAAAGAA-AAC
1 AAAAAAA-AAGAAC
840968 AAAAAATAAAGAAC
1 AAAAAA-AAAGAAC
840982 AAAAA
1 AAAAA
840987 TCAAAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.31
14 18 0.62
15 2 0.07
ACGTcount: A:0.83, C:0.07, G:0.09, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAGAAC
Found at i:841632 original size:22 final size:22
Alignment explanation
Indices: 841604--841680 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
841594 GCTACCCCAT
841604 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
841626 CAAACCTATGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
841648 CAAACCTTTGAACATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
841670 CAAACCTTTGA
1 CAAACCTTTGA
841681 CCAAACATAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.39, C:0.27, G:0.12, T:0.22
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:842928 original size:106 final size:106
Alignment explanation
Indices: 842490--843567 Score: 1687
Period size: 106 Copynumber: 10.2 Consensus size: 106
842480 ATATCGTGCC
* * * * * * *
842490 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAA-CAATAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
* * * *
842554 AATTTCGGCGACAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
842595 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
* *
842660 AATTTCAGAGCCAATTTCAACTTCACAACGGAGGATATCGTGCC
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATAT--TG-G
* * * * *
842704 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACGGCTGGTTGTCAA-CAATAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
* * * *
842768 AATTTCGGCGACAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
842809 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
842874 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
842915 ACTCCAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
*
842980 AATTTCAGAGCCAATTTCAACTTTACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
843021 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
*
843086 AATTTCAGAGCCAATTTCAACTTCACAACGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
843127 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
*
843192 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * *
843233 ACTCCAGACAACGCAAGTTCAACTTCACGACGAATGGACCGATGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
*
843298 AATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
843339 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
843404 AATTTCAGAGCCAATTTCAACTTCACAAC-ATAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGA-AGGATATTGG
* *
843445 ACTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
* * *
843510 AATTTCAGAGCCAATTTCAACTTCTCAACGAAGGATCTTAG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
843551 A-TCCAAGACAACACAAG
1 ACTCC-AGACAACGCAAG
843568 CAGCATCCAT
Statistics
Matches: 898, Mismatches: 67, Indels: 15
0.92 0.07 0.02
Matches are distributed among these distances:
105 101 0.11
106 702 0.78
107 1 0.00
108 44 0.05
109 50 0.06
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:843882 original size:124 final size:124
Alignment explanation
Indices: 843714--844316 Score: 379
Period size: 124 Copynumber: 4.8 Consensus size: 124
843704 CATAACTTTC
* * *
843714 ATTGGATTTCAACTTCACGATGAATGATATCCAATTCAAGGCTCAA-TTCCACGACGGAGGGGCC
1 ATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTT-CACGACGAAGGGGCC
* * * * * * * *
843778 ATCCACGGTTTCAACTTCACGATGAAGGGAATCGTGCACACAAGCAGCATTCATCTTTAA
65 ACCCACGGTTTCAACTTCAAGACGAAGGGAACCGTACACACAAACAGCATCCATCTCTAA
* * * *
843838 ATTGAATTTCAACTTCATGACAAAGGATATCCAATTTC-AGGCTCAACTTCACGACGAATGGGCC
1 ATTGGATTTCAACTTCACGACGAAGGATATCCAA-TTCAAGGCTCAACTTCACGACGAAGGGGCC
* * *
843902 ACCCGCGGTTTCAACTTCAAGACGAAGGGAACCGTACACACAAACATCATCCATCTCTAT
65 ACCCACGGTTTCAACTTCAAGACGAAGGGAACCGTACACACAAACAGCATCCATCTCTAA
* * ** * * *
843962 ATTGGATTTCAACTTCACGACGAAGGATATCCAACTCAAAGAAGGGGT-GTCTGT-A-AACAAAC
1 ATTGGATTTCAACTTCACGACGAAGGATATCCAATTC----AA-GGCTCAACT-TCACGACGAAG
*** ** ** * * *
844024 TTTCCAGTTTCA-GAGTCAATTTCAACTTCACAG-CGAA-GGATATTG-GC-CTCGGAACA--AT
60 GGGCCA--CCCACG-G----TTTCAACTTCA-AGACGAAGGGA-ACCGTACACAC-AAACAGCAT
** * *
844082 GTAACT-TAC
115 CCATCTCTAA
* * * * *
844091 ATTGGATTTCAACTTCAAGGCGAATGATATCCAATTCAAGGCTCAACTTCACAATGAAGGGGCCA
1 ATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACGACGAAGGGGCCA
* * * * * * * ** *
844156 TCCACGGTTTCAACTTCACGACGATA-GGAATCGTGCTCACCAACAACATTAATCTTTAA
66 CCCACGGTTTCAACTTCAAGACGA-AGGGAACCGTACACACAAACAGCATCCATCTCTAA
* * *
844215 GGTTGGATTTCAACTTTACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCC
1 -ATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACGACGAAGGGGCC
* * * *
844280 ATCCACGGTTTCAACTTCACGATGAAGGGAATCGTAC
65 ACCCACGGTTTCAACTTCAAGACGAAGGGAACCGTAC
844317 CCACCAGCAA
Statistics
Matches: 374, Mismatches: 73, Indels: 63
0.73 0.14 0.12
Matches are distributed among these distances:
119 1 0.00
120 17 0.05
121 10 0.03
122 2 0.01
123 7 0.02
124 141 0.38
125 102 0.27
126 7 0.02
127 7 0.02
128 5 0.01
129 41 0.11
130 5 0.01
131 2 0.01
132 8 0.02
133 17 0.05
134 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (124 bp):
ATTGGATTTCAACTTCACGACGAAGGATATCCAATTCAAGGCTCAACTTCACGACGAAGGGGCCA
CCCACGGTTTCAACTTCAAGACGAAGGGAACCGTACACACAAACAGCATCCATCTCTAA
Found at i:844322 original size:125 final size:125
Alignment explanation
Indices: 844092--844322 Score: 374
Period size: 125 Copynumber: 1.8 Consensus size: 125
844082 GTAACTTACA
* * *
844092 TTGGATTTCAACTTCAAGGCGAATGATATCCAATTCAAGGCTCAACTTCACAATGAAGGGGCCAT
1 TTGGATTTCAACTTCAAGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
* *
844157 CCACGGTTTCAACTTCACGACGATAGGAATCGTGCTCACCAACAACATTAATCTTTAAGG
66 CCACGGTTTCAACTTCACGACGATAGGAATCGTACCCACCAACAACATTAATCTTTAAGG
* *
844217 TTGGATTTCAACTTTACGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
1 TTGGATTTCAACTTCAAGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
*
844282 CCACGGTTTCAACTTCACGATGA-AGGGAATCGTACCCACCA
66 CCACGGTTTCAACTTCACGACGATA-GGAATCGTACCCACCA
844323 GCAATATTCA
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
124 1 0.01
125 96 0.99
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (125 bp):
TTGGATTTCAACTTCAAGACGAAGGATATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCAT
CCACGGTTTCAACTTCACGACGATAGGAATCGTACCCACCAACAACATTAATCTTTAAGG
Found at i:844896 original size:13 final size:13
Alignment explanation
Indices: 844880--844909 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
844870 TATTATAATA
*
844880 ATTATTTATTATT
1 ATTATTAATTATT
844893 ATTATTAATTATT
1 ATTATTAATTATT
844906 ATTA
1 ATTA
844910 ATTCTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTATTAATTATT
Found at i:844908 original size:16 final size:16
Alignment explanation
Indices: 844869--844909 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
844859 TATATATTTG
* *
844869 TTATTATAATAATTAT
1 TTATTATTATAATTAA
*
844885 TTATTATTATTATTAA
1 TTATTATTATAATTAA
844901 TTATTATTA
1 TTATTATTA
844910 ATTCTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTATTATTATAATTAA
Found at i:844910 original size:10 final size:10
Alignment explanation
Indices: 844878--844921 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
844868 GTTATTATAA
844878 TAATTATTTAT
1 TAATTA-TTAT
844889 T-ATTATTAT
1 TAATTATTAT
844898 TAATTATTAT
1 TAATTATTAT
*
844908 TAATT-CTAT
1 TAATTATTAT
844917 TAATT
1 TAATT
844922 TTTTTTTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 13 0.42
10 17 0.55
11 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (10 bp):
TAATTATTAT
Found at i:849065 original size:13 final size:12
Alignment explanation
Indices: 849047--849152 Score: 53
Period size: 13 Copynumber: 8.8 Consensus size: 12
849037 ATACTTTACT
849047 ATAATATATAACA
1 ATAATATATAA-A
*
849060 ATAATATATAGTA
1 ATAATATATA-AA
*
849073 ATAATATTATAAT
1 ATAATA-TATAAA
849086 ATAATATAT---
1 ATAATATATAAA
*
849095 -TAATATTTAAA
1 ATAATATATAAA
*
849106 ACT-ATAATATAAT
1 A-TAAT-ATATAAA
849119 ATAATATATAATA
1 ATAATATATAA-A
* **
849132 ACAATA-ATATT
1 ATAATATATAAA
849143 ATAATATATA
1 ATAATATATA
849153 CTATGTAATA
Statistics
Matches: 71, Mismatches: 11, Indels: 23
0.68 0.10 0.22
Matches are distributed among these distances:
8 7 0.10
11 5 0.07
12 18 0.25
13 37 0.52
14 4 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (12 bp):
ATAATATATAAA
Found at i:849089 original size:26 final size:27
Alignment explanation
Indices: 849046--849168 Score: 83
Period size: 28 Copynumber: 4.5 Consensus size: 27
849036 TATACTTTAC
* *
849046 TATAATATATAACAATAATATA-TAGTA
1 TATAATATATAA-TATAATATATTAATA
849073 -ATAATATTATAATATAATATATTAATA
1 TATAATA-TATAATATAATATATTAATA
* * *
849100 TTTAAAACTATAATATAATATAAT-ATA
1 TATAATA-TATAATATAATATATTAATA
* * *
849127 TAATAACA-ATAATATTATAATATATACTA
1 T-ATAATATATAATATAAT-ATAT-TAATA
*
849156 TGTAATATATAAT
1 TATAATATATAAT
849169 GCTTTGGACA
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
26 23 0.31
27 16 0.21
28 28 0.37
29 8 0.11
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (27 bp):
TATAATATATAATATAATATATTAATA
Found at i:849090 original size:5 final size:5
Alignment explanation
Indices: 849060--849126 Score: 52
Period size: 5 Copynumber: 13.6 Consensus size: 5
849050 ATATATAACA
* * *
849060 ATAAT AT-AT AGTAAT AATATT ATAAT ATAAT AT-AT -TAAT AT-TT AAAACT
1 ATAAT ATAAT A-TAAT -ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA-T
849109 ATAAT ATAAT ATAAT ATA
1 ATAAT ATAAT ATAAT ATA
849127 TAATAACAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
3 1 0.02
4 9 0.18
5 29 0.59
6 9 0.18
7 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:849100 original size:62 final size:63
Alignment explanation
Indices: 849044--849165 Score: 146
Period size: 62 Copynumber: 2.0 Consensus size: 63
849034 AATATACTTT
**
849044 ACTATAATAT-ATAACAATA-ATATATAGTAATAATATTATAATATAATA-TAT-TAATAT-TTA
1 ACTATAATATAAT-ACAATATATA-ATAACAATAATATTATAATAT-ATACTATGTAATATATT-
849104 AA
62 AA
*
849106 ACTATAATATAATATAATATATAATAACAATAATATTATAATATATACTATGTAATATAT
1 ACTATAATATAATACAATATATAATAACAATAATATTATAATATATACTATGTAATATAT
849166 AATGCTTTGG
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
61 3 0.06
62 37 0.71
63 11 0.21
64 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (63 bp):
ACTATAATATAATACAATATATAATAACAATAATATTATAATATATACTATGTAATATATTAA
Found at i:849165 original size:24 final size:23
Alignment explanation
Indices: 849046--849152 Score: 85
Period size: 24 Copynumber: 4.5 Consensus size: 23
849036 TATACTTTAC
*
849046 TATAATATATAACAATAATATAT
1 TATAATATATAATAATAATATAT
849069 AGTAATAATATTATAAT-ATAATATA-
1 --T-ATAATA-TATAATAATAATATAT
* * *
849094 T-TAATATTTAAAACTATAATATAA
1 TATAATATATAATA--ATAATATAT
*
849118 TATAATATATAATAACAATAATAT
1 TATAATATATAATAATAAT-ATAT
849142 TATAATATATA
1 TATAATATATA
849153 CTATGTAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
20 4 0.06
21 5 0.07
23 13 0.19
24 15 0.22
25 11 0.16
26 14 0.21
27 5 0.07
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (23 bp):
TATAATATATAATAATAATATAT
Found at i:869982 original size:24 final size:24
Alignment explanation
Indices: 869938--870009 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 24
869928 GATATAGAAA
**
869938 GCTTGTGCTTTTGCAATAGATGAG
1 GCTTGTGCTTTTGCAGCAGATGAG
* * *
869962 GCTTGTACTTTTGCAGCAGATAAA
1 GCTTGTGCTTTTGCAGCAGATGAG
** *
869986 TTTTGTGCTTTTGTAGCAGATGAG
1 GCTTGTGCTTTTGCAGCAGATGAG
870010 TCCCCTTGAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.39
Consensus pattern (24 bp):
GCTTGTGCTTTTGCAGCAGATGAG
Found at i:882634 original size:21 final size:22
Alignment explanation
Indices: 882575--882634 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 22
882565 AATAATTATC
882575 TTCTTTTCTTTTGATCTTCCAAATT
1 TTCTTTTC-TTTG-TCTTCC-AATT
*
882600 TT-TTATCTTT-TCTTCC-ATT
1 TTCTTTTCTTTGTCTTCCAATT
882619 TTCTTTTCTTTGTCTT
1 TTCTTTTCTTTGTCTT
882635 TTTAAAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
19 5 0.16
20 7 0.23
21 10 0.32
23 3 0.10
24 4 0.13
25 2 0.06
ACGTcount: A:0.10, C:0.20, G:0.03, T:0.67
Consensus pattern (22 bp):
TTCTTTTCTTTGTCTTCCAATT
Found at i:882720 original size:24 final size:24
Alignment explanation
Indices: 882690--882760 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
882680 GTTGGATATA
*
882690 GAAGCTTGTGCTTTTGCAGTAGAT
1 GAAGCTTGTGCTTTTGCAGCAGAT
*
882714 GAGGCTTGTGCTTTTGCAGCAGAT
1 GAAGCTTGTGCTTTTGCAGCAGAT
** *
882738 GAATTTTGTGCTTTTGTAGCAGA
1 GAAGCTTGTGCTTTTGCAGCAGA
882761 CGAGTCCCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.38
Consensus pattern (24 bp):
GAAGCTTGTGCTTTTGCAGCAGAT
Found at i:887861 original size:19 final size:19
Alignment explanation
Indices: 887820--887866 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
887810 GAGCCATGAG
** *
887820 TGTATCGATGAATTAGTTC
1 TGTATCGATGAATTAACTA
*
887839 TGTATCGATGCATTAACTA
1 TGTATCGATGAATTAACTA
887858 TGTATCGAT
1 TGTATCGAT
887867 ACACAAAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.40
Consensus pattern (19 bp):
TGTATCGATGAATTAACTA
Found at i:892305 original size:12 final size:12
Alignment explanation
Indices: 892288--892319 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
892278 ATGGTTCTCT
892288 AACGTCATGTCC
1 AACGTCATGTCC
*
892300 AACGTCATGTCT
1 AACGTCATGTCC
892312 AACGTCAT
1 AACGTCAT
892320 TTGTATTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (12 bp):
AACGTCATGTCC
Found at i:895606 original size:19 final size:19
Alignment explanation
Indices: 895582--895667 Score: 122
Period size: 19 Copynumber: 4.5 Consensus size: 19
895572 GTCGGTCGGG
*
895582 TCAGACCGATCAAACCGGT
1 TCAGACCGGTCAAACCGGT
895601 TCAGACCGGTCAAACCGGT
1 TCAGACCGGTCAAACCGGT
*
895620 TCAGACCGGTCAAACTGGT
1 TCAGACCGGTCAAACCGGT
895639 TC-GAACCGGTCAAACCGG-
1 TCAG-ACCGGTCAAACCGGT
895657 TCAGAACCGGT
1 TCAG-ACCGGT
895668 TGAAAACCGA
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
18 3 0.05
19 59 0.95
ACGTcount: A:0.28, C:0.30, G:0.26, T:0.16
Consensus pattern (19 bp):
TCAGACCGGTCAAACCGGT
Found at i:895619 original size:9 final size:9
Alignment explanation
Indices: 895580--895667 Score: 86
Period size: 9 Copynumber: 9.3 Consensus size: 9
895570 GGGTCGGTCG
*
895580 GGTCAGACC
1 GGTCAAACC
*
895589 GATCAAACC
1 GGTCAAACC
*
895598 GGTTCAGACC
1 GG-TCAAACC
895608 GGTCAAACC
1 GGTCAAACC
*
895617 GGTTCAGACC
1 GG-TCAAACC
*
895627 GGTCAAACT
1 GGTCAAACC
*
895636 GGTTCGAACC
1 GG-TCAAACC
895646 GGTCAAACC
1 GGTCAAACC
895655 GGTCAGAACC
1 GGTCA-AACC
895665 GGT
1 GGT
895668 TGAAAACCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
9 34 0.53
10 30 0.47
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.16
Consensus pattern (9 bp):
GGTCAAACC
Found at i:902823 original size:7 final size:7
Alignment explanation
Indices: 902811--902855 Score: 81
Period size: 7 Copynumber: 6.4 Consensus size: 7
902801 GTCAAAGAAA
902811 GTCAACG
1 GTCAACG
902818 GTCAACG
1 GTCAACG
902825 GTCAACG
1 GTCAACG
902832 GTCAACG
1 GTCAACG
*
902839 GTTAACG
1 GTCAACG
902846 GTCAACG
1 GTCAACG
902853 GTC
1 GTC
902856 CGGTCGGGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.29, T:0.18
Consensus pattern (7 bp):
GTCAACG
Found at i:902899 original size:9 final size:9
Alignment explanation
Indices: 902862--902930 Score: 57
Period size: 9 Copynumber: 7.3 Consensus size: 9
902852 GGTCCGGTCG
*
902862 GGTCAGACC
1 GGTCAAACC
*
902871 GATCAAACC
1 GGTCAAACC
**
902880 GGTTCGGACC
1 GG-TCAAACC
902890 GGTCAAACC
1 GGTCAAACC
**
902899 GGTTCGGACC
1 GG-TCAAACC
902909 GGTCAAACC
1 GGTCAAACC
902918 GGTCAGAACC
1 GGTCA-AACC
902928 GGT
1 GGT
902931 TGAAAATCGG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
9 25 0.54
10 21 0.46
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.14
Consensus pattern (9 bp):
GGTCAAACC
Found at i:902930 original size:19 final size:19
Alignment explanation
Indices: 902867--902920 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
902857 GGTCGGGTCA
*
902867 GACCGATCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
902886 GACCGGTCAAACCGGTTCG
1 GACCGGTCAAACCGGTTCG
902905 GACCGGTCAAACCGGT
1 GACCGGTCAAACCGGT
902921 CAGAACCGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.24, C:0.31, G:0.30, T:0.15
Consensus pattern (19 bp):
GACCGGTCAAACCGGTTCG
Found at i:908950 original size:5 final size:5
Alignment explanation
Indices: 908940--909113 Score: 68
Period size: 5 Copynumber: 34.8 Consensus size: 5
908930 GAATATATTT
* *
908940 TAATA TAATA T-ATAA CAATA -ATATA TAATGA TAATA -CA-A TAATA
1 TAATA TAATA TAAT-A TAATA TA-ATA TAAT-A TAATA TAATA TAATA
* *
908984 TAAAA TAATA T-A-A TAATAA TAATA TAATA -CA-A TAATA TAATATA
1 TAATA TAATA TAATA TAAT-A TAATA TAATA TAATA TAATA T-A-ATA
* *
909028 TAATAA TAATAA TAATA TACA-A TAATA TAATA T-ATA AAATA T-ATGC
1 TAAT-A TAAT-A TAATA TA-ATA TAATA TAATA TAATA TAATA TAAT-A
* *
909074 TATTA TAATA T-ATGC TATATAA TAATA TAATA T-ATA TAAT
1 TAATA TAATA TAAT-A TA-AT-A TAATA TAATA TAATA TAAT
909114 GCATATTACC
Statistics
Matches: 129, Mismatches: 16, Indels: 48
0.67 0.08 0.25
Matches are distributed among these distances:
3 4 0.03
4 21 0.16
5 66 0.51
6 30 0.23
7 8 0.06
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:908960 original size:13 final size:13
Alignment explanation
Indices: 908944--909044 Score: 60
Period size: 13 Copynumber: 8.2 Consensus size: 13
908934 ATATTTTAAT
908944 ATAATATATAACA
1 ATAATATATAACA
908957 ATAATATAT---A
1 ATAATATATAACA
*
908967 ATGATA-AT-ACA
1 ATAATATATAACA
908978 AT-A-ATATAA-A
1 ATAATATATAACA
*
908988 ATAATATAATAATA
1 ATAATAT-ATAACA
909002 ATAATATA-ATACA
1 ATAATATATA-ACA
*
909015 ATAATATAATATATA
1 ATAATAT-ATA-ACA
*
909030 ATAATA-ATAATA
1 ATAATATATAACA
909042 ATA
1 ATA
909045 TACAATAATA
Statistics
Matches: 74, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
9 3 0.04
10 12 0.16
11 5 0.07
12 9 0.12
13 26 0.35
14 9 0.12
15 10 0.14
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (13 bp):
ATAATATATAACA
Found at i:908993 original size:3 final size:3
Alignment explanation
Indices: 908940--909068 Score: 98
Period size: 3 Copynumber: 44.7 Consensus size: 3
908930 GAATATATTT
* * *
908940 TAA T-A TAA TATA TAA CAA TAA TATA TAA TGA TAA T-A CAA TAA T-A
1 TAA TAA TAA TA-A TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
*
908984 TAA -AA TAA T-A TAA TAA TAA TAA T-A TAA T-A CAA TAA T-A TAA TATA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
*
909028 TAA TAA TAA TAA TAA TATA CAA TAA T-A TAA TATA TAA -AA TA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TA-A TAA TAA TA
909069 TATGCTATTA
Statistics
Matches: 101, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
2 18 0.18
3 69 0.68
4 14 0.14
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:909020 original size:37 final size:36
Alignment explanation
Indices: 908940--909068 Score: 156
Period size: 34 Copynumber: 3.5 Consensus size: 36
908930 GAATATATTT
* *
908940 TAATATAATATATAACAATAATATATAATGATAATACAA
1 TAATATAAAATAT-ATAATAATA-ATAAT-ATAATACAA
908979 TAATATAAAATAATATAATAATAATAATATAATACAA
1 TAATATAAAAT-ATATAATAATAATAATATAATACAA
909016 TAATAT--AATATATAATAATAATAATA-ATATACAA
1 TAATATAAAATATATAATAATAATAATATA-ATACAA
* *
909050 TAATATAATATATAAAATA
1 TAATATAAAATATATAATA
909069 TATGCTATTA
Statistics
Matches: 82, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
33 1 0.01
34 29 0.35
35 3 0.04
36 9 0.11
37 15 0.18
38 5 0.06
39 18 0.22
40 2 0.02
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (36 bp):
TAATATAAAATATATAATAATAATAATATAATACAA
Found at i:909057 original size:34 final size:34
Alignment explanation
Indices: 908883--909068 Score: 154
Period size: 34 Copynumber: 5.4 Consensus size: 34
908873 AACCCAAAAA
**
908883 AATAT-TAAT-ATAATAATAATATA-AATGGTAT
1 AATATATAATAATAATAATAATATACAATAATAT
* * ***
908914 -ATAT-TTATAAGT-ATAAGAATATATTTTAATAT
1 AATATATAATAA-TAATAATAATATACAATAATAT
*
908946 AATATATAACAATAATATATAATGATAATACAATAATAT
1 AATATAT---AATAATA-ATAATAAT-ATACAATAATAT
908985 AAAATAATATAATAATAATAAT-ATAATACAATAATAT
1 --AAT-ATATAATAATAATAATAAT-ATACAATAATAT
909022 AATATATAATAATAATAATAATATACAATAATAT
1 AATATATAATAATAATAATAATATACAATAATAT
909056 AATATATAA-AATA
1 AATATATAATAATA
909069 TATGCTATTA
Statistics
Matches: 128, Mismatches: 12, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
30 7 0.05
31 11 0.09
32 5 0.04
33 8 0.06
34 38 0.30
35 5 0.04
36 1 0.01
37 19 0.15
38 11 0.09
39 16 0.12
41 3 0.02
42 4 0.03
ACGTcount: A:0.59, C:0.02, G:0.03, T:0.37
Consensus pattern (34 bp):
AATATATAATAATAATAATAATATACAATAATAT
Found at i:909109 original size:29 final size:28
Alignment explanation
Indices: 908890--909109 Score: 117
Period size: 31 Copynumber: 7.9 Consensus size: 28
908880 AAAAATATTA
*
908890 ATATA-ATAATAATATAA-ATGGTATATAT
1 ATATATATAATAATATAATAT-ATA-ATAT
* * *
908918 TTATAAGTATAAGAATAT-AT-TTTAATAT
1 ATAT-A-TATAATAATATAATATATAATAT
* *
908946 A-ATATATAA-CA-ATAATATATAAT-G
1 ATATATATAATAATATAATATATAATAT
*
908970 ATA-ATACAATAATATAA-A-ATAATAT
1 ATATATATAATAATATAATATATAATAT
*
908995 A-ATA-ATAATAATATAATACAATAATAT
1 ATATATATAATAATATAATA-TATAATAT
*
909022 AATATATAATAATAATAATAATATACAATAAT
1 -ATATAT-ATAATAAT-ATAATATATAAT-AT
*
909054 ATAATATATAA-AATATATGCTATTATAATAT
1 AT-ATATATAATAATATA--ATA-TATAATAT
*
909085 ATGCTATATAATAATATAATATATA
1 AT-ATATATAATAATATAATATATA
909110 TAATGCATAT
Statistics
Matches: 149, Mismatches: 18, Indels: 49
0.69 0.08 0.23
Matches are distributed among these distances:
23 2 0.01
24 26 0.17
25 16 0.11
26 5 0.03
27 9 0.06
28 8 0.05
29 13 0.09
30 7 0.05
31 40 0.27
32 23 0.15
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (28 bp):
ATATATATAATAATATAATATATAATAT
Done.