Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007419.1 Hibiscus syriacus cultivar Beakdansim tig00020068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130909

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3366--3458
9
9.8
9
72
15
62
17
25
26
30
1.97
3366--3404
21
1.9
21
89
5
62
17
25
23
33
1.96
3368--3464
19
5.1
19
76
16
69
15
27
26
29
1.96
3366--3464
28
3.4
30
81
12
109
17
27
26
29
1.97
3461--3517
5
10.8
5
78
10
51
19
50
21
8
1.74
3461--3524
22
3.0
22
90
2
103
18
48
21
10
1.79
3466--3512
17
2.9
16
84
12
60
19
48
21
10
1.78
10478--10503
2
13.0
2
100
0
52
50
0
0
50
1.00
14432--14465
14
2.3
15
90
5
52
58
0
5
35
1.22
17183--17259
37
2.1
37
85
4
102
46
2
3
46
1.34
21661--21695
14
2.5
14
95
0
61
40
0
2
57
1.14
21931--21970
16
2.4
16
83
4
53
45
0
0
55
0.99
21881--21962
41
2.0
42
85
7
114
50
0
0
50
1.00
21924--21973
16
3.1
16
75
18
50
48
0
0
52
1.00
33676--33719
22
2.0
22
82
8
54
43
9
2
45
1.48
40329--40353
11
2.3
11
100
0
50
40
0
0
60
0.97
41603--41646
22
2.0
22
82
8
54
43
9
2
45
1.48
60765--60791
13
2.1
13
100
0
54
22
14
7
55
1.64
62836--63484
225
2.9
225
95
0
1156
27
23
19
29
1.98
70434--70779
180
1.9
180
82
4
439
32
17
23
26
1.97
79254--79278
13
1.9
13
100
0
50
48
12
8
32
1.69
86175--86520
180
1.9
180
82
4
439
32
17
24
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91069--91118
21
2.3
22
82
10
66
58
8
10
24
1.57
95721--95751
2
15.5
2
100
0
62
0
51
0
48
1.00
101932--101971
2
20.0
2
100
0
80
50
0
0
50
1.00
113288--113312
2
12.5
2
100
0
50
0
48
0
52
1.00
113563--113624
16
3.9
16
93
0
106
56
24
11
8
1.61
114724--114779
14
4.3
14
76
17
66
51
26
14
7
1.67
114703--114771
24
2.9
24
88
0
102
57
20
10
11
1.62
114796--114881
40
2.2
37
76
11
91
36
17
12
33
1.88
118530--118562
16
2.1
16
100
0
66
27
30
12
30
1.92
118760--118788
2
14.5
2
100
0
58
48
0
0
51
1.00
120036--120087
2
26.0
2
100
0
104
50
0
0
50
1.00
121688--121808
60
2.0
60
100
0
242
26
18
23
31
1.97
123399--123450
18
2.9
18
82
0
68
21
19
28
30
1.97
125769--125820
18
2.9
18
82
0
68
21
19
28
30
1.97
127296--127374
30
2.7
28
81
11
79
46
10
21
21
1.80
127296--127375
29
2.7
29
83
9
83
47
10
21
21
1.79
127329--127439
29
3.8
29
78
8
93
47
11
20
19
1.80

Tables:   1

The End!