genome.fa.s742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000742.1 Hibiscus syriacus cultivar Beakdansim tig00001432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109130

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312--383	34	2.1	34	89	0	108	40	19	23	16	1.91
12209--12283	21	3.6	21	94	0	123	29	25	22	22	1.99
12271--12359	20	4.4	20	81	13	110	38	16	19	25	1.92
12291--12368	41	1.9	41	91	0	129	37	17	19	25	1.94
12225--12340	21	5.7	19	85	11	69	32	19	22	25	1.97
12289--12379	41	2.2	41	84	0	128	40	18	17	23	1.91
12461--12507	6	8.5	6	93	6	66	29	53	17	0	1.44
12465--12510	5	8.6	5	92	2	56	28	52	19	0	1.47
12465--12510	10	4.3	11	89	10	69	28	52	19	0	1.47
17241--17462	21	10.9	21	75	6	179	36	25	14	22	1.93
17241--17361	42	2.9	42	92	0	197	33	28	17	20	1.95
17757--17783	7	3.9	7	100	0	54	40	29	0	29	1.57
19734--19782	21	2.3	21	100	0	98	61	16	0	22	1.34
37561--37619	28	2.1	29	96	3	111	35	18	13	32	1.90
45126--45180	28	2.0	28	85	0	74	36	21	12	29	1.91
45957--45981	12	2.1	12	100	0	50	44	0	24	32	1.54
46323--46398	11	6.6	11	69	8	53	25	23	23	27	2.00
46407--46437	16	1.9	16	93	0	53	12	12	25	48	1.77
62167--62700	264	2.0	262	98	0	1023	32	14	17	35	1.90
64195--64256	31	2.0	31	81	12	74	24	4	16	54	1.61
64699--64765	27	2.6	27	86	6	86	32	16	14	35	1.90
65065--65112	21	2.2	22	85	3	62	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72372--73169	264	3.0	264	98	0	1528	32	14	17	35	1.90
75062--75141	37	2.1	38	86	6	110	36	27	7	28	1.84
79710--79756	18	2.7	18	83	3	60	34	8	27	29	1.87
81282--81322	18	2.3	18	87	4	66	60	14	4	19	1.51
81295--81352	29	2.0	29	86	3	80	55	17	1	25	1.52
82261--82285	13	1.9	13	100	0	50	12	8	24	56	1.62
88090--88129	18	2.3	18	95	4	73	62	15	5	17	1.49
88120--88192	29	2.5	29	93	2	128	50	19	2	27	1.61
88133--88186	17	3.5	17	71	23	64	50	22	3	24	1.65
89000--89174	37	4.8	36	81	1	179	42	10	17	29	1.83
92363--92400	16	2.4	16	86	4	51	42	21	10	26	1.85
92404--92517	40	2.8	41	79	4	131	40	14	13	32	1.84
94696--94785	47	1.9	47	86	0	126	34	7	11	46	1.68
94834--94933	34	2.9	34	96	3	182	36	8	12	44	1.71
97399--97479	27	3.0	26	78	10	83	45	1	2	50	1.22
99813--99842	2	15.0	2	100	0	60	50	0	0	50	1.00
100884--100931	2	24.0	2	100	0	96	50	0	0	50	1.00
103248--103291	22	2.0	22	86	8	63	29	18	9	43	1.80
104582--104613	3	11.0	3	93	6	57	68	0	31	0	0.90
104531--104641	49	2.3	48	81	10	129	72	0	21	6	1.07
105378--105431	28	1.9	28	84	0	72	33	35	9	22	1.86
106746--107074	55	6.2	55	77	11	326	35	9	12	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106764--107094	104	3.2	104	84	7	341	36	9	12	40	1.77
108152--108795	139	4.7	139	86	4	842	37	17	19	25	1.94
108884--108929	23	2.0	23	91	0	74	34	17	19	28	1.94
108666--109130	244	1.9	243	97	2	882	32	18	19	29	1.96

Tables:   1

The End!