Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007420.1 Hibiscus syriacus cultivar Beakdansim tig00020082_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56011

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3771--3823
20
2.6
20
84
3
70
18
5
22
52
1.66
6414--6474
24
2.5
24
79
7
70
50
1
6
40
1.38
6388--6454
36
1.9
34
82
11
82
50
1
7
40
1.39
7358--7386
14
2.1
14
93
6
51
34
13
31
20
1.92
7490--7516
13
2.1
13
100
0
54
7
14
0
77
0.97
11922--11947
8
3.2
8
100
0
52
26
0
11
61
1.30
13540--13570
15
2.0
15
93
6
53
48
6
0
45
1.28
15254--15283
13
2.3
13
94
0
51
20
23
10
46
1.80
22181--22304
31
4.0
32
73
8
78
17
26
29
26
1.98
28621--28670
23
2.2
22
89
6
82
56
4
6
34
1.43
28675--28718
16
2.7
16
92
3
70
59
4
0
36
1.18
29209--29318
50
2.2
49
88
1
157
39
13
20
26
1.90
29260--29307
20
2.4
20
85
0
60
37
10
22
29
1.88
31234--31460
113
2.0
113
100
0
454
35
10
9
44
1.72
34668--34711
17
2.4
18
85
7
54
40
4
6
47
1.50
35084--35108
12
2.1
12
100
0
50
52
0
8
40
1.31
36758--36800
20
2.2
20
86
0
59
18
6
20
53
1.67
39283--39553
2
139.5
2
69
21
132
45
2
6
45
1.45
39287--39620
10
33.5
10
68
20
103
43
2
8
44
1.50
39548--39630
41
2.1
39
81
4
94
40
3
14
40
1.63
42156--42184
12
2.4
12
100
0
58
37
0
37
24
1.56
42648--42707
24
2.4
25
86
2
86
48
13
15
23
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46555--46586
16
2.0
16
93
0
55
46
6
0
46
1.27
46764--46834
24
3.0
24
79
4
72
49
15
12
22
1.78
53504--53561
9
6.6
9
76
11
57
58
3
5
32
1.37
53477--53584
23
5.0
22
68
25
70
54
1
5
37
1.35
54051--54146
50
2.0
48
87
4
138
40
11
19
28
1.86
54173--54212
19
2.0
20
90
4
64
35
17
15
32
1.91
54557--54623
34
2.0
34
84
0
89
31
17
28
22
1.97

Tables:   1

The End!