genome.fa.s7421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007421.1 Hibiscus syriacus cultivar Beakdansim tig00020087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65586

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724--900	92	1.9	91	87	9	259	48	16	12	22	1.81
1067--1191	61	2.0	61	90	6	200	24	38	16	21	1.92
2614--2650	19	1.9	19	100	0	74	48	18	21	10	1.78
2663--2707	19	2.4	19	84	0	63	6	15	26	51	1.68
3262--3372	20	5.5	20	80	6	98	25	18	24	31	1.98
4494--4546	23	2.3	23	90	0	88	41	15	24	18	1.89
6736--6770	2	17.5	2	100	0	70	51	0	0	48	1.00
8816--8859	2	22.0	2	100	0	88	50	0	0	50	1.00
13162--13304	27	5.3	27	85	0	205	39	25	8	26	1.84
13169--13304	54	2.5	54	92	0	236	39	25	8	27	1.83
13236--13363	68	1.9	66	90	3	202	42	24	7	26	1.80
13298--13363	29	2.4	27	84	5	78	42	24	7	25	1.81
13178--13349	4	43.8	4	72	8	75	41	25	6	26	1.79
15393--15460	30	2.2	29	82	14	84	41	0	7	51	1.30
20820--20869	20	2.5	20	96	0	91	32	20	16	32	1.94
24051--24191	61	2.3	61	78	8	144	45	4	17	33	1.67
26912--26946	18	2.1	18	89	10	56	8	25	14	51	1.70
33994--34442	229	2.0	227	93	0	772	45	7	6	39	1.60
34678--34715	20	1.9	20	100	0	76	52	13	15	18	1.74
36949--37013	21	3.1	21	80	6	69	40	15	29	15	1.88
37047--37112	33	2.0	33	90	0	105	28	0	48	22	1.51
38893--38935	19	2.4	19	88	7	63	30	2	11	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39054--39624	199	2.9	198	98	1	1101	36	15	16	31	1.91
41080--41159	6	13.3	6	78	0	61	37	7	35	20	1.81
41083--41129	24	2.0	24	95	0	85	36	10	36	17	1.84
41119--41163	3	15.0	3	85	0	63	37	2	33	26	1.69
41083--41159	12	6.4	12	84	0	73	36	7	35	20	1.82
42629--43335	182	3.9	183	97	0	1310	35	14	16	33	1.89
42629--43335	365	1.9	365	96	0	1317	35	14	16	33	1.89
45801--45860	25	2.4	25	85	0	75	33	10	15	41	1.80
46148--46193	22	2.1	22	84	8	58	41	10	8	39	1.71
46211--46274	23	2.8	23	82	0	83	37	6	18	37	1.76
46211--46283	23	3.2	23	78	7	76	35	5	19	39	1.75
46547--46597	25	2.0	25	92	0	84	33	7	19	39	1.81
46985--47021	18	2.1	18	89	0	56	32	5	10	51	1.60
46977--47023	24	2.0	24	86	0	67	34	4	14	46	1.64
47280--47366	39	2.2	39	93	0	147	48	19	13	18	1.81
47770--47842	23	3.2	23	80	7	85	36	5	17	39	1.73
49713--49741	2	14.5	2	100	0	58	51	0	0	48	1.00
51332--51409	40	2.1	38	85	9	106	56	11	8	23	1.63
57598--57634	19	1.9	19	88	0	56	32	27	16	24	1.96
57660--57711	20	2.5	20	75	3	50	25	21	21	32	1.98
57660--57805	61	2.4	61	88	0	229	29	19	18	32	1.96
57695--57830	61	2.2	61	81	2	157	36	19	16	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58261--58351	19	4.4	20	75	17	87	29	27	5	37	1.79
58272--58353	44	1.9	41	82	7	101	31	28	6	34	1.82

Tables:   1

The End!