Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007422.1 Hibiscus syriacus cultivar Beakdansim tig00020088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92531

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1382--1421
21
1.9
21
89
0
62
30
7
7
55
1.56
3421--3461
19
2.1
20
90
4
66
12
24
43
19
1.85
3760--3824
29
2.3
27
84
5
76
63
4
16
15
1.47
4767--4792
4
6.5
4
100
0
52
76
0
0
23
0.78
4853--4899
15
3.1
15
84
3
58
51
6
0
42
1.27
4876--4982
38
2.8
38
87
4
144
48
5
2
42
1.41
4885--5197
37
8.7
35
71
16
187
45
7
3
43
1.50
4957--5018
24
2.6
24
97
0
115
40
6
4
48
1.50
4984--5194
39
5.6
36
78
10
167
45
8
3
43
1.51
5027--5194
75
2.2
73
84
6
178
45
8
3
41
1.53
8633--8670
18
2.1
18
85
9
51
60
5
7
26
1.46
9467--9497
6
5.2
6
92
0
53
29
51
3
16
1.59
15927--15996
21
3.3
21
69
21
65
70
14
5
10
1.33
15924--16044
42
2.7
43
86
10
172
68
15
4
11
1.34
15924--16045
48
2.7
44
87
8
176
68
15
4
11
1.34
15967--16046
23
3.4
23
69
6
70
71
13
3
11
1.27
19103--19140
3
12.7
3
100
0
76
31
0
0
68
0.90
19121--19188
25
2.7
26
80
13
70
30
1
0
67
0.99
26810--26971
63
2.5
65
83
6
181
25
19
20
33
1.96
32718--33177
85
5.4
85
78
7
407
28
22
17
31
1.97
32718--33184
43
10.9
43
81
2
424
27
22
17
31
1.97
39102--39165
6
10.7
6
96
0
110
31
31
17
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44601--44631
16
1.9
16
93
0
53
41
9
6
41
1.63
49193--49246
20
2.6
22
85
8
69
25
12
31
29
1.93
49234--49357
53
2.3
54
81
9
148
30
16
21
31
1.95
53333--53383
20
2.5
20
84
9
59
31
11
27
29
1.92
53352--53496
53
2.7
53
80
7
134
30
15
22
31
1.95
54125--54171
23
2.0
23
95
0
85
40
10
21
27
1.86
61341--61380
2
20.0
2
100
0
80
50
0
0
50
1.00
61388--61430
21
2.0
21
90
0
68
32
0
9
58
1.30
62736--62798
21
3.0
20
70
9
54
46
1
1
50
1.20
62864--62924
26
2.3
27
75
8
63
47
0
1
50
1.10
62955--63024
23
3.1
23
82
10
74
31
2
0
65
1.07
62974--63024
3
17.7
3
84
8
70
31
0
0
68
0.90
62974--63024
26
2.0
26
92
0
84
31
0
0
68
0.90
63008--63085
32
2.4
32
82
0
102
41
1
2
55
1.22
63170--63226
20
2.9
19
76
7
60
45
1
1
50
1.22
72637--72875
119
2.0
119
100
0
478
25
20
22
31
1.98
76019--76092
10
7.6
10
68
22
50
59
20
9
10
1.58
76026--76094
16
4.3
16
86
0
93
59
20
8
11
1.58
76023--76085
32
2.0
32
93
0
108
58
20
11
9
1.60
76731--76762
14
2.3
14
100
0
64
50
21
15
12
1.77
76687--76755
24
2.9
24
82
0
93
59
18
8
13
1.59
79734--79831
43
2.3
43
81
0
124
33
17
22
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80490--80546
21
2.7
21
97
0
105
40
19
19
21
1.92
82064--82142
41
2.0
40
82
7
97
32
15
18
32
1.92
83101--83138
15
2.4
16
86
4
51
21
21
28
28
1.98
83182--83232
17
3.1
17
77
11
61
17
25
33
23
1.96
83784--83839
26
2.2
26
83
6
69
33
1
3
60
1.24
83907--83960
26
2.1
26
85
0
72
29
7
18
44
1.77
84740--84767
2
14.0
2
100
0
56
50
0
0
50
1.00
86208--86252
3
16.0
3
78
21
53
64
0
0
35
0.94
86208--86252
14
3.2
14
84
12
65
64
0
0
35
0.94
86401--87108
76
9.4
76
93
1
1185
34
21
19
24
1.96
86401--87108
151
4.7
152
93
1
1194
34
21
19
24
1.96
87781--87857
22
3.5
22
96
0
145
40
14
11
33
1.82
92435--92493
16
3.7
16
88
6
84
0
15
1
83
0.74
92441--92492
11
5.0
10
78
21
54
0
11
1
86
0.65
92441--92496
22
2.6
22
83
5
71
0
14
1
83
0.72

Tables:   1

The End!