genome.fa.s7425.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007425.1 Hibiscus syriacus cultivar Beakdansim tig00020118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140684

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3263--3319	30	1.9	30	89	7	89	14	21	33	31	1.92
3499--3542	23	1.9	23	95	0	79	9	25	38	27	1.86
3495--3549	23	2.4	22	82	8	74	10	23	41	23	1.86
3687--3769	40	2.0	41	95	2	150	32	19	30	18	1.95
4011--4370	173	2.1	173	92	1	596	38	4	18	38	1.72
6101--6149	6	8.2	6	90	0	71	18	4	61	16	1.50
6603--6994	37	9.7	42	76	18	263	49	5	4	40	1.48
6643--7045	14	29.9	14	66	19	87	49	5	3	40	1.43
6646--7045	8	52.2	8	67	21	83	50	5	4	40	1.44
6704--6966	14	17.3	17	69	21	106	49	6	4	39	1.50
6737--6994	37	6.7	37	84	9	329	49	6	5	39	1.50
6745--6947	23	8.7	23	72	13	121	49	6	5	38	1.51
6730--7012	60	4.6	60	86	7	342	49	6	4	39	1.50
6680--6994	119	2.6	118	81	11	413	49	5	4	40	1.48
6859--7036	23	6.9	27	72	18	110	51	4	3	40	1.41
6858--7046	14	14.6	13	73	15	90	51	4	3	40	1.39
13075--13223	59	2.6	58	78	5	149	34	18	4	43	1.68
13346--13525	59	3.0	60	76	9	183	42	5	21	31	1.74
25874--25898	5	5.0	5	100	0	50	0	20	0	80	0.72
33288--33348	21	3.2	21	63	29	55	34	4	18	42	1.71
33280--33398	35	3.3	36	85	5	161	34	5	16	43	1.70
37914--37974	21	3.2	21	65	29	64	31	4	21	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37906--38025	35	3.3	36	88	6	172	32	5	19	43	1.72
49537--50367	168	4.9	168	92	0	1356	35	12	29	22	1.91
53131--53158	2	14.0	2	100	0	56	50	0	0	50	1.00
56092--56136	21	2.1	21	83	0	54	31	15	4	48	1.65
59380--59444	30	2.2	29	89	5	96	40	21	18	20	1.92
59372--59444	29	2.5	30	86	4	105	41	20	20	17	1.91
59636--59691	28	2.0	28	89	0	85	37	17	21	23	1.94
67146--67363	112	1.9	112	90	1	348	22	14	12	50	1.76
68476--68509	2	17.0	2	100	0	68	50	0	0	50	1.00
70140--70167	2	14.0	2	100	0	56	50	0	0	50	1.00
71238--71276	6	6.5	6	90	0	60	48	0	51	0	1.00
71238--71286	18	2.7	18	84	6	64	51	0	48	0	1.00
78209--78235	12	2.2	12	100	0	54	37	11	0	51	1.37
79250--79301	2	27.0	2	92	7	90	50	0	0	50	1.00
82279--82336	16	3.5	16	77	9	71	20	1	12	65	1.34
82263--82353	34	2.6	34	89	3	137	19	5	12	62	1.48
84260--84287	2	14.0	2	100	0	56	0	50	0	50	1.00
85484--85536	21	2.5	21	79	11	56	22	1	30	45	1.63
85810--86038	121	1.9	122	85	0	316	43	9	15	31	1.79
87220--87319	51	2.0	50	86	2	137	38	6	22	34	1.78
89944--90006	16	3.8	16	77	8	72	19	1	14	65	1.35
89928--90018	34	2.6	34	92	3	146	17	5	14	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91927--91956	2	15.0	2	100	0	60	0	50	0	50	1.00
93153--93205	21	2.5	21	79	11	56	22	1	30	45	1.63
93446--93756	122	2.5	120	79	2	334	44	8	14	33	1.74
94891--94990	51	2.0	50	86	2	137	38	6	22	34	1.78
97624--97686	16	3.8	16	77	8	72	19	1	14	65	1.35
97608--97698	34	2.6	34	92	3	146	17	5	14	62	1.49
99605--99630	2	13.0	2	100	0	52	0	50	0	50	1.00
100826--100878	21	2.5	21	79	11	56	22	1	30	45	1.63
101121--101431	122	2.5	120	78	2	325	45	8	13	32	1.74
102568--102667	51	2.0	50	86	2	137	39	6	22	33	1.78
104057--106116	8	259.1	8	96	1	1761	25	1	24	48	1.60
104268--106116	4	465.0	4	98	1	3603	24	0	25	49	1.51
106110--106440	165	2.0	165	99	0	653	38	11	10	38	1.77
106682--106738	4	14.5	4	83	3	62	50	15	3	29	1.61
106676--106739	12	5.3	12	83	5	76	50	14	3	32	1.58
107039--107087	16	3.1	16	74	11	55	57	0	2	40	1.10
107444--107477	16	2.1	16	94	0	59	29	14	29	26	1.95
108555--108655	43	2.3	43	87	0	139	22	24	19	32	1.97
108647--108725	29	2.7	28	73	9	68	20	15	21	43	1.88
111160--111221	29	2.1	29	100	0	124	35	25	16	22	1.94
118138--118232	2	47.5	2	93	0	163	47	0	3	49	1.17
134839--134869	13	2.4	13	94	0	53	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135214--135284	30	2.3	31	85	2	90	40	15	21	22	1.90

Tables:   1

The End!