genome.fa.s7429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007429.1 Hibiscus syriacus cultivar Beakdansim tig00020141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139381

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275--1362	41	2.1	41	78	12	92	29	26	17	27	1.97
1361--1985	21	30.1	21	71	16	402	19	19	24	36	1.95
1372--1450	40	1.9	40	87	5	113	18	20	25	35	1.95
1345--1982	61	10.3	61	80	11	448	19	19	24	36	1.95
1431--1982	42	13.2	42	82	10	472	19	19	24	36	1.95
2338--2402	21	3.1	21	90	0	103	20	41	26	12	1.87
2427--2468	20	2.1	20	100	0	84	14	42	28	14	1.84
2505--2546	21	2.0	21	95	0	75	23	21	28	26	1.99
2575--2614	20	1.9	21	85	10	55	37	35	10	17	1.83
3261--3313	21	2.7	19	85	8	70	30	22	22	24	1.99
3384--3426	19	2.3	19	95	0	77	23	20	25	30	1.99
3391--3434	19	2.3	19	92	0	70	22	18	25	34	1.96
9129--9175	19	2.5	19	96	0	85	44	25	10	19	1.82
9427--9456	14	2.1	14	100	0	60	20	36	13	30	1.90
17874--17898	13	1.9	13	100	0	50	48	0	0	52	1.00
18242--18311	33	2.1	33	86	0	95	25	27	35	11	1.90
18339--18394	29	1.9	29	92	0	94	19	28	37	14	1.91
19595--19664	21	3.2	21	64	18	52	28	11	2	57	1.48
19705--19738	15	2.2	16	94	5	61	29	5	0	64	1.17
19849--19885	3	12.3	3	100	0	74	67	0	0	32	0.91
23461--23562	34	2.8	37	86	10	149	44	14	12	28	1.82
23458--23588	37	3.6	37	81	10	153	42	15	11	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24290--24338	20	2.4	21	80	13	57	28	4	2	65	1.22
27137--27175	8	5.0	8	84	6	53	10	17	12	58	1.61
28353--28405	9	5.3	9	77	16	52	84	5	9	0	0.76
28351--28411	16	3.8	16	77	16	63	81	6	11	0	0.85
28353--28411	25	2.4	25	86	13	88	84	5	10	0	0.76
28359--28404	12	3.7	12	86	13	58	84	6	8	0	0.77
28359--28411	13	4.2	13	85	9	74	84	5	9	0	0.76
28344--28421	32	2.5	32	79	6	97	78	6	15	0	0.95
30014--30137	36	3.4	36	82	6	160	25	20	13	40	1.89
30113--30268	67	2.4	67	84	4	201	32	23	8	35	1.86
30872--31532	106	6.3	105	88	3	902	32	24	19	23	1.97
32080--32181	34	2.8	37	88	10	158	43	14	13	28	1.84
32080--32215	37	3.8	35	82	9	159	41	13	13	30	1.84
32694--32726	2	17.0	2	93	6	59	48	0	0	51	1.00
32788--32832	22	2.1	21	84	12	56	28	2	2	66	1.15
32796--32830	16	2.2	16	94	0	61	31	0	2	65	1.07
32920--32953	16	2.1	16	88	0	50	32	5	0	61	1.20
32934--32984	21	2.4	22	80	3	59	27	3	1	66	1.20
37315--37464	60	2.5	60	79	5	178	36	19	5	39	1.74
38339--38375	13	3.0	13	80	11	51	70	8	0	21	1.13
42707--42746	4	10.0	4	83	0	53	70	5	0	25	1.08
43028--43057	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46905--46937	12	2.9	11	91	8	57	45	9	9	36	1.68
47822--47873	16	3.2	17	72	22	58	42	0	19	38	1.51
48165--48204	21	1.9	21	85	10	55	32	15	2	50	1.57
53623--53754	60	2.2	60	82	6	153	39	8	9	42	1.68
54297--54945	336	1.9	336	89	1	1007	40	13	11	34	1.80
58901--58941	21	2.0	21	85	0	55	53	2	4	39	1.35
60347--60406	2	30.0	2	100	0	120	50	0	0	50	1.00
60687--60766	23	3.4	24	77	6	92	33	22	20	23	1.97
60840--60893	15	3.5	15	84	2	72	44	18	0	37	1.50
63773--64047	98	2.9	93	83	7	334	26	21	13	38	1.90
64985--65062	39	2.1	39	85	4	106	57	8	7	25	1.56
65064--65097	11	3.0	11	91	4	50	50	0	2	47	1.16
67458--67518	31	2.0	31	86	0	86	39	16	11	32	1.84
69173--69215	21	2.0	21	100	0	86	32	11	32	23	1.90
70494--70518	3	8.3	3	100	0	50	68	0	32	0	0.90
89777--89823	2	23.5	2	100	0	94	48	0	0	51	1.00
98633--98694	12	5.6	12	70	14	53	45	1	1	51	1.20
98659--99023	22	16.6	22	93	1	606	40	0	10	49	1.38
99576--99646	34	2.1	34	84	7	90	49	8	7	35	1.60
99769--99824	21	2.8	19	76	10	58	64	3	0	32	1.11
100418--100470	15	3.5	15	76	20	56	45	0	15	39	1.46
101166--101195	14	2.1	14	100	0	60	26	16	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101737--101781	20	2.2	21	88	4	65	40	0	4	55	1.20
102545--102627	25	3.1	25	73	15	85	55	3	0	40	1.17
105513--105638	60	2.1	60	83	0	153	37	13	12	36	1.83
109918--109950	15	2.1	16	88	5	50	9	24	15	51	1.72
110696--110729	16	2.1	16	94	0	59	32	26	8	32	1.87
115060--115116	29	2.0	29	89	0	87	40	3	14	42	1.62
116036--116074	20	1.9	21	84	5	53	66	5	2	25	1.25
119884--119928	20	2.2	19	81	18	54	60	0	2	37	1.09
120407--120978	147	3.9	147	89	3	832	39	13	13	32	1.84
120407--120979	222	2.6	217	88	3	831	39	13	13	32	1.84
120407--120979	73	7.8	74	88	3	827	39	13	13	32	1.84
121059--121288	112	2.0	113	93	3	390	45	13	14	26	1.82
130138--130178	2	20.5	2	100	0	82	48	0	0	51	1.00
130550--130670	33	3.7	33	97	0	224	36	16	23	23	1.94
131469--131500	4	8.0	4	92	0	55	28	0	0	71	0.86
132404--132447	22	2.0	22	86	0	61	25	13	47	13	1.79
132904--132937	12	2.7	13	81	9	52	35	0	11	52	1.38

Tables:   1

The End!