Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000743.1 Hibiscus syriacus cultivar Beakdansim tig00001433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60809

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
362--693
78
4.4
76
77
12
317
25
17
20
36
1.94
429--724
150
2.0
151
81
7
352
24
17
21
36
1.94
3769--3822
18
3.0
18
94
0
99
16
18
33
31
1.93
6527--6629
36
2.9
36
98
0
197
23
17
17
41
1.90
16120--16178
20
3.4
17
80
15
75
50
8
0
40
1.33
16756--16848
4
23.8
4
82
6
102
2
26
1
69
1.06
20008--20164
76
2.1
76
96
0
287
50
17
12
18
1.77
20008--20199
76
2.6
74
85
7
182
54
16
10
17
1.70
21138--21226
29
3.1
29
83
4
101
51
10
8
29
1.66
22227--22266
2
20.0
2
100
0
80
50
0
0
50
1.00
22867--22897
16
2.0
16
93
6
55
83
0
0
16
0.64
29011--29259
130
1.9
131
90
0
401
35
14
13
36
1.86
29586--29648
28
2.3
27
78
8
63
46
1
3
49
1.27
29725--29757
17
1.9
17
88
11
50
63
6
3
27
1.32
29878--29920
21
2.0
21
100
0
86
39
0
13
46
1.44
29889--29974
35
2.5
35
84
0
100
37
1
20
40
1.61
30104--30161
29
2.0
29
86
6
82
27
8
29
34
1.87
34977--35028
25
2.0
26
82
10
63
46
5
3
44
1.45
39063--39135
18
3.9
18
82
7
101
28
31
20
19
1.97
39062--39138
38
2.0
38
92
0
127
28
29
20
20
1.98
39703--39823
64
1.9
63
83
5
154
23
21
21
33
1.98
45836--45882
3
15.7
3
100
0
94
0
0
31
68
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48093--48162
29
2.4
30
78
2
79
34
15
4
45
1.66
52116--52157
22
2.0
22
85
4
59
33
16
7
42
1.75
55017--55054
11
3.5
11
79
13
51
81
2
10
5
0.94
56370--56464
2
48.5
2
85
8
124
48
3
1
47
1.24
57163--58617
84
17.7
83
76
7
1191
25
19
24
30
1.98
57271--58617
249
5.5
247
84
4
1460
25
19
24
30
1.98
57163--58617
162
8.9
164
81
5
1227
25
19
24
30
1.98
57098--58617
411
3.7
409
81
5
1599
25
19
24
30
1.98
59340--59397
26
2.2
26
87
0
80
24
18
12
44
1.84

Tables:   1

The End!