Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007430.1 Hibiscus syriacus cultivar Beakdansim tig00020144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75525

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10795--10849
3
17.7
3
85
7
74
40
0
0
60
0.97
11325--11364
21
1.9
21
94
0
71
27
20
10
42
1.83
11544--11594
22
2.3
22
93
0
84
21
41
15
21
1.90
11961--12013
19
2.8
20
85
8
74
15
16
20
47
1.83
13934--13975
12
3.5
12
83
6
50
23
0
7
69
1.13
14123--14216
21
4.5
21
79
0
98
21
37
20
21
1.95
15552--15584
13
2.4
14
95
5
59
30
0
21
48
1.50
15563--15709
64
2.3
64
89
4
219
29
2
16
51
1.58
15782--15915
54
2.6
54
81
8
145
29
17
23
29
1.97
15918--15973
29
1.9
29
96
0
103
32
25
16
26
1.96
18625--18658
12
2.8
12
90
0
50
14
0
29
55
1.40
19424--19494
20
3.7
19
74
14
65
33
11
22
32
1.90
19506--19598
20
4.6
20
80
12
100
30
11
24
33
1.91
19498--19598
41
2.5
40
81
12
109
31
12
22
32
1.92
19615--19653
20
2.0
20
89
0
60
25
15
17
41
1.89
20482--21188
6
118.5
6
98
1
1377
33
0
16
50
1.46
21570--22080
55
9.3
54
86
4
593
28
24
14
32
1.94
21566--22051
110
4.4
110
88
1
663
28
24
14
32
1.94
21566--22051
165
3.0
165
85
1
665
28
24
14
32
1.94
22038--22573
54
9.8
54
84
6
505
23
23
18
34
1.96
22039--22574
108
4.9
108
84
5
591
23
23
18
34
1.96
22096--22574
162
2.9
162
83
7
560
22
23
18
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23805--23859
12
3.9
14
80
17
60
14
9
1
74
1.14
23792--23835
21
2.1
21
82
0
52
9
9
2
79
1.02
23817--23861
15
2.9
16
87
12
67
13
13
2
71
1.25
23823--23872
15
3.3
15
86
10
50
10
14
2
74
1.16
27388--27415
2
14.0
2
100
0
56
0
0
50
50
1.00
32228--32301
25
3.0
25
81
0
103
33
27
8
31
1.86
35636--35693
2
29.0
2
100
0
116
50
0
0
50
1.00
38162--38304
6
24.5
6
69
21
65
4
19
0
76
0.95
38164--38304
15
9.9
14
68
25
73
4
19
0
75
0.96
38162--38297
21
6.4
20
72
20
93
4
19
0
75
0.97
38161--38260
27
3.6
28
76
17
93
5
20
0
75
0.99
38173--38242
36
1.9
37
85
8
99
5
21
0
72
1.05
38212--38304
25
4.0
23
75
22
70
5
17
0
77
0.95
44503--44546
22
2.0
22
91
4
72
43
2
4
50
1.35
47511--47635
60
2.1
60
90
0
196
17
12
32
37
1.87
58053--58114
20
3.0
20
79
9
63
38
16
14
30
1.88
58071--58114
21
2.1
21
87
4
63
38
15
13
31
1.87
73960--74008
19
2.7
17
84
9
53
26
20
28
24
1.99
74473--74512
16
2.5
16
100
0
80
22
40
0
37
1.54

Tables:   1

The End!