genome.fa.s7432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007432.1 Hibiscus syriacus cultivar Beakdansim tig00020158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180061

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567--1600	16	2.1	17	88	5	52	38	2	17	41	1.65
5147--5214	23	3.0	23	84	0	91	32	22	20	25	1.98
8234--8386	44	3.5	44	89	1	227	22	23	12	41	1.88
8549--8582	14	2.4	14	95	0	59	26	29	11	32	1.92
10323--10586	44	5.9	44	78	7	232	28	21	9	39	1.85
17125--17392	44	6.0	44	78	5	247	27	23	9	39	1.86
28891--29801	232	3.9	233	87	2	1258	32	16	17	33	1.92
29956--29998	3	15.0	3	83	9	54	30	2	2	65	1.18
41641--41771	43	3.0	42	79	8	147	28	19	22	29	1.98
42321--42365	19	2.4	19	92	0	72	0	33	20	46	1.51
42320--42372	19	2.6	20	82	11	63	0	30	18	50	1.47
42320--42378	19	2.9	20	76	19	59	0	30	18	50	1.47
50869--50900	14	2.3	14	100	0	64	6	15	28	50	1.68
50870--50920	24	2.1	24	85	0	66	11	11	21	54	1.68
51936--52012	16	4.8	16	96	0	145	7	12	23	55	1.63
51964--52016	10	6.1	10	68	31	50	7	11	22	58	1.57
52082--52114	16	2.1	16	100	0	66	6	12	24	57	1.57
52202--52255	27	2.0	27	100	0	108	37	7	22	33	1.82
52789--52816	14	2.0	14	100	0	56	42	7	21	28	1.79
54092--54253	40	4.1	40	90	0	261	24	15	25	33	1.95
61550--61711	40	4.1	40	95	0	288	23	15	26	34	1.94
62292--62334	21	2.0	22	95	4	79	32	32	20	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62613--62890	134	2.1	134	84	1	369	35	16	16	30	1.91
67588--67659	20	3.5	20	78	10	83	26	13	18	41	1.87
74670--74780	3	35.7	3	78	10	107	32	0	5	61	1.25
74684--74751	19	3.4	19	76	11	82	27	0	8	63	1.24
74682--74754	22	3.5	22	77	11	98	28	0	8	63	1.23
74670--74780	16	7.1	15	78	9	107	32	0	5	61	1.25
74670--74768	41	2.5	41	95	3	175	32	0	6	61	1.20
76686--76749	5	12.4	5	73	6	56	23	3	1	71	1.08
76677--76733	27	2.1	27	84	9	73	26	3	0	70	1.03
77202--77398	97	2.0	98	98	2	378	18	18	15	47	1.83
88982--89013	2	16.0	2	100	0	64	50	0	0	50	1.00
90236--90310	32	2.3	33	84	4	82	30	16	21	32	1.95
90495--90726	61	3.8	60	84	6	277	34	22	15	27	1.94
93442--93509	32	2.1	32	83	5	84	16	11	7	64	1.47
97093--97162	3	22.3	3	75	13	61	34	1	5	58	1.31
97093--97162	13	5.6	12	80	11	70	34	1	5	58	1.31
98867--98921	27	2.0	28	89	7	85	25	0	0	74	0.82
98876--98937	29	2.2	28	85	8	81	24	0	3	72	0.99
102976--103018	15	2.9	14	80	10	50	51	2	6	39	1.42
112826--113487	55	12.0	55	91	1	1004	34	11	17	35	1.87
112836--113559	329	2.2	330	86	3	985	34	11	18	35	1.87
112825--113575	55	13.6	55	86	5	683	34	11	18	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118808--119294	218	2.2	220	90	1	780	34	12	18	34	1.89
118808--119294	55	8.9	55	90	1	780	34	12	18	34	1.89
118809--119366	55	10.2	55	87	3	498	33	12	19	34	1.89
122348--122444	50	2.0	48	81	4	113	40	16	11	31	1.84
125572--127070	500	3.0	500	91	0	2401	23	19	26	30	1.98
135326--135718	209	1.9	209	82	3	504	37	17	16	27	1.92
136382--136419	18	2.1	18	90	9	60	31	34	18	15	1.92
137494--137544	19	2.6	20	90	3	77	43	5	15	35	1.71
138308--138367	30	2.0	31	86	3	86	53	10	8	28	1.63
139760--139810	19	2.6	20	90	3	77	43	5	15	35	1.71
140707--140766	30	2.0	31	86	3	86	53	10	8	28	1.63
143242--143293	15	3.2	16	76	17	54	1	17	1	78	0.93
143263--143311	17	2.7	18	79	17	57	8	12	4	75	1.16
144033--144085	19	2.7	20	88	5	81	43	5	15	35	1.70
144980--145039	30	2.0	31	86	3	86	53	10	8	28	1.63
145725--145795	19	3.7	18	81	9	79	39	16	1	42	1.57
151269--151324	28	1.9	30	82	7	71	33	19	8	37	1.83
153722--153810	29	3.0	29	71	18	74	44	10	12	32	1.75
161429--161477	20	2.5	20	93	0	80	26	24	16	32	1.96
161443--161497	20	2.8	20	85	0	65	27	27	14	30	1.95
164639--165011	46	8.2	46	89	2	545	24	21	10	43	1.84
164639--165011	137	2.7	138	89	1	554	24	21	10	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164653--165004	20	15.6	20	67	23	141	23	22	10	42	1.85
164654--165011	183	2.0	183	90	2	576	24	21	10	43	1.84
171184--171308	42	2.9	44	86	5	166	25	21	9	43	1.83
171276--171333	25	2.3	26	93	3	100	22	18	13	44	1.85
172874--173087	47	4.6	47	90	2	333	35	20	7	37	1.80
177598--177807	46	4.6	47	91	4	340	36	20	6	37	1.77
179965--180054	45	2.0	44	82	6	110	28	14	25	31	1.95

Tables:   1

The End!