genome.fa.s7434.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007434.1 Hibiscus syriacus cultivar Beakdansim tig00020254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135889

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404--773	54	6.9	54	86	3	507	31	18	18	32	1.95
4197--4241	21	2.1	21	100	0	90	37	6	26	28	1.82
7006--7392	54	7.2	54	86	4	523	32	18	17	31	1.94
8020--8151	5	26.2	5	67	26	66	37	1	5	55	1.32
8017--8142	8	15.4	8	70	19	68	38	1	4	55	1.31
8087--8134	17	2.7	19	81	15	66	37	2	6	54	1.38
8851--8891	22	1.9	22	95	5	75	51	4	17	26	1.65
11559--11607	19	2.6	19	83	0	62	32	0	10	57	1.32
13295--13338	19	2.3	19	92	0	70	6	15	15	61	1.54
15180--15538	201	1.8	191	80	11	422	38	10	11	39	1.76
15180--15581	201	2.1	191	79	10	420	38	10	12	39	1.77
26346--26384	21	1.9	21	89	5	62	25	15	23	35	1.94
30101--30146	23	2.0	23	100	0	92	21	8	26	43	1.81
38611--38668	29	2.1	29	83	6	75	22	6	10	60	1.53
38699--38742	15	2.9	15	80	16	54	11	0	9	79	0.93
38699--38745	24	1.9	24	86	4	67	12	0	8	78	0.95
41614--42150	183	2.9	183	96	0	977	27	20	21	30	1.98
43290--43464	72	2.4	75	83	8	200	27	18	13	41	1.87
43306--43419	36	3.2	36	72	7	106	26	16	14	42	1.86
43466--43542	39	2.0	39	81	0	91	32	19	11	36	1.88
43468--43764	106	2.9	103	88	4	454	30	20	12	36	1.89
43664--43739	36	2.1	36	90	0	116	22	21	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43859--44306	105	4.3	104	89	3	643	33	26	18	22	1.96
43859--44306	205	2.2	211	88	3	658	33	26	18	22	1.96
44849--44953	37	2.8	37	82	0	129	41	14	12	31	1.82
45311--45353	18	2.5	17	85	7	61	25	4	2	67	1.22
45851--45886	2	18.0	2	88	0	54	44	0	0	55	0.99
48605--48644	21	1.9	21	100	0	80	15	20	30	35	1.93
50343--50432	43	2.1	43	87	0	126	33	14	21	31	1.93
50452--50521	32	2.2	32	94	0	122	35	25	12	25	1.92
51342--51408	23	2.9	23	81	0	80	29	20	25	23	1.99
52637--52670	9	3.6	10	88	11	54	52	17	0	29	1.45
52641--52687	19	2.6	19	83	6	53	53	23	0	23	1.47
53124--53185	29	2.1	29	96	0	115	29	24	22	24	1.99
57122--57161	2	20.0	2	100	0	80	50	0	0	50	1.00
57149--57247	48	2.1	48	98	0	189	37	7	8	47	1.60
60737--60775	13	2.7	15	80	15	55	25	0	2	71	0.98
61328--61381	17	3.3	17	76	10	58	55	0	0	44	0.99
62799--62834	18	2.0	18	88	0	54	8	13	30	47	1.73
65861--66081	54	4.1	54	85	4	320	37	19	15	27	1.92
65872--66075	108	1.9	108	93	0	354	37	19	14	27	1.91
66356--66403	13	3.7	13	94	0	87	27	20	18	33	1.96
66382--66547	85	2.0	85	93	0	287	30	21	17	30	1.96
76996--77049	24	2.2	24	93	0	90	25	20	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83563--83784	54	4.1	54	88	0	336	36	18	15	29	1.92
88871--88930	30	2.0	30	93	6	104	33	6	16	43	1.74
89021--89097	21	4.0	21	74	19	71	23	33	28	14	1.94
89048--89096	15	3.0	15	80	14	53	26	30	28	14	1.95
89021--89097	19	4.2	19	77	16	81	23	33	28	14	1.94
89131--89174	21	2.1	21	95	0	79	13	47	25	13	1.79
89210--89249	21	1.9	21	94	0	71	25	15	30	30	1.95
89280--89319	20	1.9	22	90	10	66	37	40	10	12	1.77
89534--89603	34	2.1	32	89	5	104	31	15	31	21	1.95
91397--91450	26	2.1	26	96	0	99	29	7	14	48	1.71
91464--91503	2	21.0	2	85	10	57	50	0	2	47	1.14
95349--95398	20	2.5	21	80	9	59	34	10	24	32	1.88
96076--96154	23	3.4	24	75	7	99	22	20	24	32	1.97
96088--96171	23	3.6	24	71	18	70	26	20	22	30	1.98
108408--108442	2	17.5	2	100	0	70	48	0	0	51	1.00
108440--108486	4	11.8	4	100	0	94	25	0	23	51	1.49
110826--110878	2	26.5	2	100	0	106	49	0	0	50	1.00
115065--115176	55	2.0	55	100	0	224	41	19	11	26	1.86
117002--117071	24	2.9	24	93	0	113	30	18	7	44	1.76
118499--118538	17	2.5	15	84	11	53	55	0	0	45	0.99
129636--129665	14	2.1	15	93	6	53	53	0	3	43	1.17
131771--131842	22	3.3	22	83	11	78	30	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135636--135677	13	3.0	14	86	10	59	23	21	26	28	1.99

Tables:   1

The End!