Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007435.1 Hibiscus syriacus cultivar Beakdansim tig00020265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72092
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3326 original size:17 final size:17
Alignment explanation
Indices: 3306--3358 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
3296 ATTAAAAAGT
3306 TAGTTTAATTAATGAAC
1 TAGTTTAATTAATGAAC
* * *
3323 TAGTTAAATGAATAAAC
1 TAGTTTAATTAATGAAC
* *
3340 TATTTTAATTAAAGAAC
1 TAGTTTAATTAATGAAC
3357 TA
1 TA
3359 ACTTTATTGA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (17 bp):
TAGTTTAATTAATGAAC
Found at i:8024 original size:214 final size:214
Alignment explanation
Indices: 7656--24489 Score: 25271
Period size: 214 Copynumber: 78.6 Consensus size: 214
7646 AAAGCCCCTT
* *
7656 TCATTTTTCATTTTCAAACTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
7720 ACTTATCATCTTGCTTTAAAGACTTACAGATGACCCGAATGATTTAAGCATCATGCACGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * * *
7785 TTATTGATGGGCTGAAGGACTTATAAATTGTCAAATTTTGAAAATCGTATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
7850 TTTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
7869 TCATTTTTCATTTTCAAATTCATGTAAAAACATCCTACCCGAAGGTCTTATGGATGGCTCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
7934 ACTTATCATCTTGCTCTAAAGGGTTACAGATGACCCAAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
7999 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTCAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCAAA
*
8063 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * * *
8083 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATAGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
8147 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCTGAAGTATTTAAGCATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
8212 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
*
8276 AAAAATTTCTTCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* ** * *
8299 TCATTTTTTTCATTTTCATATTCATGTGAAAACATCCTACCTAAAGGTTTTATGGATGACTCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* * *
8364 GGACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCAAGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* ** ** * *
8429 AATTACTGATGGCCCGAAGGACTTATAAATTACGAAATTTTGAAAATTACATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
*
8494 AAATTCCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* * *
8515 TCATTTTTCATTTTCAAATTCATGTGAAAACATTCTACCCGAACGTTTTACGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
8580 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATGCTCGAACGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
8645 TTACTGATGGTCCGAAGGACTTATAAATTCTGAAATTTTGAAAATCGCATTCTTCGTTTTC-AAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
8709 ATTTTATCTTCTTAAAATA
196 ATTTCATCTTCTTAAAACA
* *
8728 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
8792 AGTTATCATCTTGCTCTAAAGACTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
8857 TTATTGATGTCCCTAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
8922 ATTTCATCTT-TTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
8940 TCATTTTTCATTTTCAAATTCATGTGAACACATCCTACCCGAAAGTTTTA-GGAAGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* *
9004 ACTTATCATCTTGCTCTAAAGACTTACAGATGACCGGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
9069 TTATTGATGGCCCGAAGGACTTATAAATTGTGATATTTTTAAAATCGCTTTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
9134 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
*
9153 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAAGTTTTAT-GATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
9217 ACTTATCATCTTGCTCTAAAGACTTATAGATGACCTGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
9282 TTATTGATGGCCCGAAGGACTTATAACTTGTGAAATTTTGAAAATTGCATTCTTAGTTTT-AAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
9346 TATTTCATCTTCTTAAAACA
196 -ATTTCATCTTCTTAAAACA
* * *
9366 TCATTTTTCATTATCAAATTCATGTAAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* *
9431 ACTTATCATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
9496 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
9561 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
9580 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
9644 AGGACTTATTATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGTATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
9709 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
*
9773 AAAAAATTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* * *
9796 TCATTTTTTCATTTTCAAATTCATGTAAAAATATCCTACCTGAAGGTTTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* * * *
9861 GACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAATGATTTAAGCATCATTCTTGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * * *
9926 CTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTGCATTTTTCGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
*
9991 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * ** *
10011 TCAATTTTCATTTTCAAATTCATGTGAAAACATCCTACTCAAAGGTTTTACAGATTGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
10076 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
10141 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
10206 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
10225 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
10289 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
* *
10354 GACTTCCTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCA
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCA
* *
10419 AAATTTTCATCTTCTTAAAATA
193 AAAATTTCATCTTCTTAAAACA
* * *
10441 TCATTCTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
10505 ACTTGTCATCTTGCTCTAAAGACTTACAGATGACCGGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
10570 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTTAAAATCGCTTTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
10635 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* *
10654 TCATTTTTCA-TTTGAAATTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * * *
10717 ACTTATCATCTTGCTCTAAAGACTTATAGATAACCTGAATGATTTAAGCATCATGCTCGAAAGGC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
10782 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
10847 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
10866 ACATTTTTCATTTTCAAATTCATGTAAAAACAGCCTACCCGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
10931 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
10996 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
11061 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
11080 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
11144 AGGACTTATTATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGTATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
11209 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
*
11273 AAAAAATTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* * *
11296 TCATTTTTTCATTTTCAAATTCATGTAAAAATATCCTACCTGAAGGTTTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* * * *
11361 GACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAATGATTTAAGCATCATTCTTGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * * *
11426 CTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTGCATTTTTCGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
*
11491 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * ** *
11511 TCAATTTTCATTTTCAAATTCATGTGAAAACATCCTACTCAAAGGTTTTACAGATTGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
11576 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
11641 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
11706 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * *
11725 TCATTTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGATCTTATGTATGGCCCG
1 TCA---TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCG
* *
11789 AAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATGCTCGAA
62 AAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAA
* *
11854 AGACTTCCTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTC
127 AGACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTC
* *
11919 AAAATTTTCATCTTCTTAAAATA
192 AAAAATTTCATCTTCTTAAAACA
* * *
11942 TCATTCTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
12006 ACTTGTCATCTTGCTCTAAAGACTTACAGATGACCGGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
12071 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTTAAAATCGCTTTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
12136 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* *
12155 TCATTTTTCATTTTGAAATTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * * *
12219 ACTTATCATCTTGCTCTAAAGACTTATAGATAACCTGAATGATTTAAGCATCATGCTCGAAAGGC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
12284 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
12349 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
12368 ACATTTTTCATTTTCAAATTCATGT-AAAACAGCCTACCCGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
12432 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
12497 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
12562 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
12581 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
12645 AGGACTTATTATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGTATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
12710 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
*
12774 AAAAAATTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* * *
12797 TCATTTTTTCATTTTCAAATTCATGTAAAAATATCCTACCTGAAGGTTTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* * * *
12862 GACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAATGATTTAAGCATCATTCTTGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * * *
12927 CTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTGCATTTTTCGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
*
12992 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * ** *
13012 TCAATTTTCATTTTCAAATTCATGTGAAAACATCCTACTCAAAGGTTTTACAGATTGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
13077 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
13142 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
13207 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * *
13226 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGATCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
13290 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
* *
13355 GACTTCCTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCA
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCA
* *
13420 AAATTTTCATCTTCTTAAAATA
193 AAAATTTCATCTTCTTAAAACA
* * *
13442 TCATTCTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
13506 ACTTGTCATCTTGCTCTAAAGACTTACAGATGACCGGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
13571 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTTAAAATCGCTTTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
13636 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
13655 TCATTTTTCATTTTGAAATTCATATGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * * *
13719 ACTTATCATCTTGCTCTAAAGACTTATAGATAACCTGAATGATTTAAGCATCATGCTCGAAAGGC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
13784 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
13849 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
13868 ACATTTTTCATTTTCAAATTCATGTAAAAACAGCCTACCCGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
13933 ACTTATAATCTTACTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
13998 TTACTGATGGCCCGAATGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
14063 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * *
14082 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGATCTTATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
*
14146 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGTATCATGCTCGAAA
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
*
14211 GACTTACTGATGG-CCGAAGGACTTATAAATTGTGAAATTTTGAAAATCTCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
14274 AAAAATTTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* * *
14297 TCATTTTTTTCATTTTCAAATTCATGTGAAAATATCCTACCTGAAGGTTTTATGGATGGCCTGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* * *
14362 GGACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAATGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * ** * *
14427 ACTTACTGATGGCCCGAAGGATTTATAAATTATGAAATTTTGAAAATTACATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
*
14492 AAATTCCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* ** *
14513 TCAATTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTACAGATTGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* *
14578 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
14643 TTCCTGATGGCCCGAAGGAATTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
14708 TTTTCATCGTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
14727 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCTGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
14791 ACTTATCATCTTGCTCTAAAGACATACAAATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
*
14856 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC-TCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
14920 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
14939 TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
*
15004 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * *
15069 ACTTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTTAAAATCGAATTC-TATGTTTTCA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTA-GTTTTCA
15133 AAAATTTCATCTTCTTAAAACA
193 AAAATTTCATCTTCTTAAAACA
* *
15155 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAACG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
15220 ACTTATCATCTTGCTCTAAAGGCTTACAGATTACCCAAAGGTTTTAAGCATCATGCTCGAAAGTC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
*
15285 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTTAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCAAA
*
15349 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * *
15369 TCATTTTTTTATTTCCAAATTCATGTG-AAA-ATCCTACCCGAAGGTCTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* *
15432 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* *
15497 CTTATTGATGGCCCAAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
* *
15562 AAATCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* ** * *
15582 TCATTTTTCATTTTCAAACTCAACTGAAAATATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
15646 ACTTATCATCTTGCTTTAAAGACTTACAGATGACCCGAATGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
15711 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
15776 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * *
15795 ACATTTTTCATTTTCAAATTCATGTAAAAACAGCCTACCCGAAGGTCTTATGGATGGCTCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
*
15860 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
15925 TTACTGATGGCCCGAAGGACTTATAAATTGGGAAATTTTGAAAATCACATTCTTTGCTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
15990 ATTCCATCTTCTTAAAGCA
196 ATTTCATCTTCTTAAAACA
* * * * *
16009 TCATTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATAGCCCGAA
1 TCA-TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
*
16073 GGACTTATCATCCTT-CTCTAAAGGCTTACAGATGACCCGAAGTATTTAAGCATCATGCTCGAAA
64 GGACTTATCAT-CTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
*
16137 GACTTACTGATGGACCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
16201 AAAAATTTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* *
16224 TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCTGAAGGTTTTATGGATGACCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* * * *
16289 GGGCTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAATGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * * *
16354 ACTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTGCATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
*
16419 AAATTCCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* * *
16440 TCATTTTTCATTTTCAAATTCATGTGAAAACATTCTACCCAAAGGTTTTACGGATGG-CCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
16504 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATACTCAAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
16569 TTACTGATGGACTGAAAGACTTATAAATTGTAAAATTTTGAAAATCGCATTCTTCA-TTTTCAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCAAA
* *
16633 ATTTTCATCTTCTTAAAATA
195 AATTTCATCTTCTTAAAACA
* * *
16653 TCATTCTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
16717 ACTTATCATCTTGTTCTAAAGACTTACAAATGACCCG-AGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
16781 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGTATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
16846 AATCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * ** * *
16865 TCATTTTTTATTTTCAAACTCATGTGAAAACATCCTACCCGAAGGTTTTACAGATTGCCCAAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
16930 ACTTATCATCTTGCTCTAAAGGCTTACTGATGACCCGAAGGAATTAACCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
16995 TTCCTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
17060 TTTTCATCGTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
17079 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCTGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * *
17143 ACTTATCATCTTGCTCTAAAGACATAAAAATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
17208 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTAAAAATCGCATTCTTCGTTTCCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
17273 ATTCCATCTTCTTATAACA
196 ATTTCATCTTCTTAAAACA
17292 TCATTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
*
17357 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTTGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* *
17422 CTTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGAATTC-TATGTTTTCAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTA-GTTTTCAA
17486 AAATTTCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* *
17507 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAACG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
17572 ACTTATCATCTTGCTCTAAAGGCTTACAGATTACCCAAAGGTTTTAAGCATCATGCTCGAAAGTC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
17637 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAAGCGCATTCTTTA-TTTTTAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC-TTAGTTTTCAAA
*
17701 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * *
17721 TCATTTTTTTATTTCCAAATTCATGTGAAAACATCCTACCCAAAGGTCTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* *
17786 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* *
17851 CTTATTGATGGCCCAAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
* *
17916 AAATCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* *
17936 TCATTTTTCATTTTCAAACTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
18000 ACTTATCATCTTGCTTTAAAGACTTACAGATGACCCGAATGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * * *
18065 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTGGAAAATCCCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
18130 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * * *
18149 ACATTTTTCATTTTCAAATTCATGTAAAAACAGCCTACCCTAAGGTCTTATGGATGGCTCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
*
18214 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
18279 TTACTGATGGCCCGAAGGACTTATAAATTGGGAAATTTTGAAAATCACATTCTTTGCTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
18344 ATTCCATCTTCTTAAAGCA
196 ATTTCATCTTCTTAAAACA
* * * * *
18363 TCATTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCTTATGTATAGCCCGAA
1 TCA-TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
*
18427 GGACTTATCATCCTT-CTCTAAAGGCTTACAGATGACCCGAAGTATTTAAGCATCATGCTCGAAA
64 GGACTTATCAT-CTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
18491 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTC
*
18555 AAAAATTTCATCTTCTTAAAATA
192 AAAAATTTCATCTTCTTAAAACA
* * *
18578 TCATTCTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
18642 ACTTATCATCTTGTTCTAAAGACTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
18707 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGTATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
18772 AATCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* ** * *
18791 TCATTTTTCATTTTCAAACTCATGTGAAAACATCCTACCCGAAGGTTTTACAGATTGCCCAAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
18856 ACTTATCATCTTGCTCTAAAGGCTTACTGATGACCCGAAGGAATTAACCATCGTGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
18921 TTCCTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
18986 TTTTCATCGTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * *
19005 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCTGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * **
19069 ACTTATCATCTTGCTCTAAAGACATAAAAATGACCCGAAGCTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
19134 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTAAAAATCGCATTCTTCGTTTCCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
19199 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
19218 TCATTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
*
19283 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTTGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* *
19348 CTTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGAATTC-TATGTTTTCAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTA-GTTTTCAA
19412 AAATTTCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* *
19433 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAACG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * *
19498 ACTTATCATCTTTCTCTAAAGGCTTACAGATTACCCAAAGGTTTTAAGCATCATGCTCGAAAGTC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
*
19563 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTTAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCAAA
*
19627 AATTCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * *
19647 TCATTTTTTTATTTCCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAG
1 TCA-TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* *
19712 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTCATCATCATGCTCGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * *
19777 CTTATTGATGGCCCAAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTTAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
* *
19842 AAATCCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* *
19862 TCATTTTTCATTTTCAAAATCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
19926 ACTTATCATCTTGCTTTAAAGACTTACAGATGACCCGAATGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
19991 TTATTGATAGG-CCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTGAAA
131 TTACTGAT-GGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
20055 AATTTCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* * * * *
20075 ACATTTTTCATTTTCAAATTCATGTAAAAACAGCCTACCCGAAGGTCTTATGGATGGCTCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
*
20140 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * * *
20205 TTACTGATGGCCTGAAGGACTTATAAATTGTGAAATTTTGAAAAGCACATTCTTTGCTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
20270 ATTCCATCTTCTTAAAGCA
196 ATTTCATCTTCTTAAAACA
* * * * * * *
20289 TAATTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGATCTTATGTATAGCCCGAA
1 TCA-TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
*
20353 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGTATTTAAGCATCATGCTCGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
*
20418 ACTTACCGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTCA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCA
20482 AAAATTTCATCTTCTTAAAACA
193 AAAATTTCATCTTCTTAAAACA
* *
20504 TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCTGAAGGTTTTATGGATGACCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* *
20569 GGACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * * *
20634 ACTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTGCATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
*
20699 AAATTCCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* * *
20720 TCATTTTTCATTTTCAAATTCATGTGAAAACATTCTACCCGAAGGTTTTACGGATGGTCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
20785 ACTTATCATCTTACCTCTAAAGGCTTACAGATGACCCGAAGGAATTAACCATCATACTCGAAAGA
66 ACTTATCATCTT-GCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * * * *
20850 CTTACTGATGGACTGAAAGACTTATAAATTGTAAAATTTTGAAAATCGCATTCTTCGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
* *
20915 ATTTTCATCTTCTTAAAATA
195 AATTTCATCTTCTTAAAACA
* * * *
20935 TCATTCTTAATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
20999 ACTTATCATCTTGTTCTAAAGACTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
*
21064 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
21129 AATCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* *
21148 TCATTTTTCATTTTCAAACTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
21212 ACTTATCATCTTGCTTTAAAGACTTACAGATGACCCGAATGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
21277 TTATTGATGGGCCGAAGGACTTATAAATTGTCAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
21342 ATTTCATTTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
21361 ACATTTTTCATTTTCAAATTCATGTAAAAACATCCTACCCGAAGGTCTTATGGATGGCTCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* *
21426 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCTGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * * *
21491 TTACTGATGGCCCGAATGACTTATAAATTATGAAATTTTGAAAATCACATTCTTTGCTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
21556 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * * * * *
21575 TCATTTTTCCGTTTTCAAATTCA-GTTGAAGACATCCCACCCAAAGGTCTTATGTATAGCCCGAA
1 TCATTTTT-CATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* *
21639 GGACTTATCATCTTTCTCTAAAGGCTTACAGATGACCCGAAGCATTTAAGCATCATGCTCGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
** * *
21704 ACTTACTGATGGCTTGAATGACATATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTCA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCA
21768 AAAATTTCATCTTCTTAAAACA
193 AAAATTTCATCTTCTTAAAACA
* * *
21790 TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCTGAAGGTTTTATAGATGACCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* *
21855 GGACTTATCATATTGCTCTAAAGGCTTACAGATGACCCG-AGGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * * * *
21919 ACTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTAAAAATTGCATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
21984 AAA-TTCTATCTTCTTAAAACA
194 AAATTTC-ATCTTCTTAAAACA
* *
22005 TCATTTTTCATTTTCAAATTCATGTGAAAACATTCTACCCGAAGGTTTTACGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
22070 ACTTATCA---TGCTCTAAAGGCTTACAGATGACCCAAAGGAATTAAACATCATACTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
22132 TTACTGATGGTCTGAAAGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
22197 TTTTCATCTTCTTAAAATA
196 ATTTCATCTTCTTAAAACA
* * * *
22216 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGACCCGAAAG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* *
22280 ACTTATCATCTTGCTCTAAAGACTTACAAATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
*
22345 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
22410 ATTTCATCTT-TTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
22428 TCATTTTTCATTTTCAAATTCATGTGAAAACATCATACCCAAAAGTTTTA-GGATAGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
*
22492 ACTTATCATCTTGCTCTAAAGACTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * ***
22557 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTAAAAATCATTTTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
22622 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
*
22641 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAAGTTTTA-GGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
22705 ACTTATCATCTTGCTCTAAAGACTTATAGATGACCTGAAGGATTTAATCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
22770 TTATTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATTGGATTCTTAGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
22835 ATTTCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* *
22854 TCATTTTTCATTTTCAAATTCATGTAAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * *
22919 ACTTATCATCTTACTCTAAAGGCTTACATATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * *
22984 TTACTGATGGCCCGAATGACTTATAAATTATGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
23049 ATTCCATCTTCTAAAAACA
196 ATTTCATCTTCTTAAAACA
* * ** *
23068 TCATTTTTTTCATTTTCAAATTCA-GTTGAAGACATCCTACCCAAAGGTCATATGTATGGCCCGA
1 TCA--TTTTTCATTTTCAAATTCATG-TGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGA
* *
23132 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGTACCATG-T----A
63 AGGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAA
23192 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTTA-TTTTC
128 GACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTC-TTAGTTTTC
23256 AAAAATTTCATCTTCTTAAAACA
192 AAAAATTTCATCTTCTTAAAACA
* * *
23279 TCATTTTTTTCATTTTCAAATTCATGTGAAAATATCCTACCTGAAGGTTTTATTGATGGCCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* *
23344 GGACTTATCATATTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTTGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
* * ** * *
23409 AGTTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATTACATTTTTCGTTTTCAA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAA
*
23474 AAATTCCATCTTCTTAAAACA
194 AAATTTCATCTTCTTAAAACA
* **
23495 TCAATTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTACAGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * *
23560 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGAAATTAACCATAATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* * * *
23625 TTCCTGATGGCCCGATGGACTTATAAATTCTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
* *
23690 TTTTCATCATCTTAAAACA
196 ATTTCATCTTCTTAAAACA
* * * *
23709 TCATTTTTCATTTTCAAATTTATGTGAAAACATCCTACCCTAAAGTTTTA-GGATGTCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * * * *
23773 ACTTATAATCTTGCTCTAAAGACTTACAAACGACCCGAAGGTTTTAAGCATCATGCTCGAAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
* *
23838 TTACTGATGGCCCGAAGGACTTATAAATTATGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAA
131 TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
*
23903 ATTCCATCTTCTTAAAACA
196 ATTTCATCTTCTTAAAACA
23922 TCATTTTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
1 TCA--TTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAA
* *
23987 GGACTTATCATCTTGCTCTAAAGGCTTACAGATTACCCGAAGGTTTTAAGCATCATGCTCGAAAG
64 GGACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAG
*
24052 TCTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTCA-TTTTCA
129 ACTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTT-AGTTTTCA
*
24116 AAAATTCCATCTTCTTAAAACA
193 AAAATTTCATCTTCTTAAAACA
* * * *
24138 TCTTTTTTTTATTTCCAAATTCATGTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAG
1 TC-ATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAG
* *
24203 GACTTACCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGAATCATGCTCGAAAGA
65 GACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
* * * * *
24268 CTTATTGATGGCCTGAAGGACTTATAAATTGTGAAATTTTGAAAATTGCATACTTTGTTTTCAAA
130 CTTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAA
24333 AATTTCATCTTCTTAAAACA
195 AATTTCATCTTCTTAAAACA
* *
24353 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCTGAAGGTCTTATGGATGGCCCGAAGG
1 TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
* * ** * * *
24418 ACTTATCATCTTGCTCTTAAGGGTTGTAGATGACCTGAAGGTTTTAAGCATCATGCTCGCAAGAC
66 ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
24483 TTACTGA
131 TTACTGA
24490 GGGGTTTGTT
Statistics
Matches: 15102, Mismatches: 1373, Indels: 291
0.90 0.08 0.02
Matches are distributed among these distances:
210 45 0.00
211 331 0.02
212 959 0.06
213 4069 0.27
214 4176 0.28
215 2923 0.19
216 2397 0.16
217 202 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (214 bp):
TCATTTTTCATTTTCAAATTCATGTGAAAACATCCTACCCGAAGGTTTTATGGATGGCCCGAAGG
ACTTATCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAC
TTACTGATGGCCCGAAGGACTTATAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAA
ATTTCATCTTCTTAAAACA
Found at i:8648 original size:42 final size:41
Alignment explanation
Indices: 8562--8663 Score: 105
Period size: 42 Copynumber: 2.5 Consensus size: 41
8552 CCCGAACGTT
* * * * * *
8562 TTACGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGC
1 TTACAGATGGCCCGAAGGAATTACCATCATGCTCGAAAGAC
* *
8603 TTACAGATGACCCGAAGGAATTAACCATCATGCTCGAACGAC
1 TTACAGATGGCCCGAAGGAATT-ACCATCATGCTCGAAAGAC
* *
8645 TTACTGATGGTCCGAAGGA
1 TTACAGATGGCCCGAAGGA
8664 CTTATAAATT
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 19 0.39
42 30 0.61
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (41 bp):
TTACAGATGGCCCGAAGGAATTACCATCATGCTCGAAAGAC
Found at i:9086 original size:42 final size:41
Alignment explanation
Indices: 8994--9091 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 41
8984 GTTTTAGGAA
* * *
8994 GGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTACAGAT
1 GGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACAGAT
* * * **
9035 GACCGGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGAT
1 GGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACAGAT
9077 GGCCCGAAGGACTTA
1 GGCCCGAAGGACTTA
9092 TAAATTGTGA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 12 0.27
42 33 0.73
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (41 bp):
GGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACAGAT
Found at i:9684 original size:41 final size:41
Alignment explanation
Indices: 9639--9735 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
9629 TTATGTATGG
* * *
9639 CCCGAAGGACTTATTATCTTGCTCTAAAGGCTTACAGATGA
1 CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
* * * *
9680 CCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGG
1 CCCGAAGGACTT-ATTATCATGCTCGAAAGACTTACAGATGA
9722 CCCGAAGGACTTAT
1 CCCGAAGGACTTAT
9736 AAATTGTGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
41 12 0.26
42 34 0.74
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
Found at i:10349 original size:42 final size:41
Alignment explanation
Indices: 10284--10375 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 41
10274 TTATGTATGG
* * * * *
10284 CCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAGATGA
1 CCCGAAGGAATTACCATCATGCTCGAAAGACTTACAGATGA
* * *
10325 CCCGAAGGAATTAACCATCATGCTCGAAAGACTTCCTGATGG
1 CCCGAAGGAATT-ACCATCATGCTCGAAAGACTTACAGATGA
10367 CCCGAAGGA
1 CCCGAAGGA
10376 CTTATAAATT
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 11 0.26
42 31 0.74
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (41 bp):
CCCGAAGGAATTACCATCATGCTCGAAAGACTTACAGATGA
Found at i:10587 original size:42 final size:41
Alignment explanation
Indices: 10492--10591 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
10482 AAAGTTTTAG
* *
10492 GATGGCCCGAAGGACTTGTCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
* * * **
10533 GATGACCGGAAGGATTTAAG-CATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT--GTCATCATGCTCGAAAGACTTACA
10575 GATGGCCCGAAGGACTT
1 GATGGCCCGAAGGACTT
10592 ATAAATTGTG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
41 14 0.30
42 32 0.68
43 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
Found at i:11184 original size:41 final size:41
Alignment explanation
Indices: 11139--11235 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
11129 TTATGTATGG
* * *
11139 CCCGAAGGACTTATTATCTTGCTCTAAAGGCTTACAGATGA
1 CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
* * * *
11180 CCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGG
1 CCCGAAGGACTT-ATTATCATGCTCGAAAGACTTACAGATGA
11222 CCCGAAGGACTTAT
1 CCCGAAGGACTTAT
11236 AAATTGTGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
41 12 0.26
42 34 0.74
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
Found at i:11872 original size:42 final size:41
Alignment explanation
Indices: 11781--11876 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 41
11771 GATCTTATGT
* * * * *
11781 ATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAG
1 ATGGCCCGAAGGAATTACCATCATGCTCGAAAGACTTACAG
* * *
11822 ATGACCCGAAGGAATTAACCATCATGCTCGAAAGACTTCCTG
1 ATGGCCCGAAGGAATT-ACCATCATGCTCGAAAGACTTACAG
11864 ATGGCCCGAAGGA
1 ATGGCCCGAAGGA
11877 CTTATAAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 14 0.31
42 31 0.69
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (41 bp):
ATGGCCCGAAGGAATTACCATCATGCTCGAAAGACTTACAG
Found at i:12088 original size:42 final size:41
Alignment explanation
Indices: 11993--12092 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
11983 AAAGTTTTAG
* *
11993 GATGGCCCGAAGGACTTGTCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
* * * **
12034 GATGACCGGAAGGATTTAAG-CATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT--GTCATCATGCTCGAAAGACTTACA
12076 GATGGCCCGAAGGACTT
1 GATGGCCCGAAGGACTT
12093 ATAAATTGTG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
41 14 0.30
42 32 0.68
43 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
Found at i:12685 original size:41 final size:41
Alignment explanation
Indices: 12640--12736 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
12630 TTATGTATGG
* * *
12640 CCCGAAGGACTTATTATCTTGCTCTAAAGGCTTACAGATGA
1 CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
* * * *
12681 CCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGG
1 CCCGAAGGACTT-ATTATCATGCTCGAAAGACTTACAGATGA
12723 CCCGAAGGACTTAT
1 CCCGAAGGACTTAT
12737 AAATTGTGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
41 12 0.26
42 34 0.74
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (41 bp):
CCCGAAGGACTTATTATCATGCTCGAAAGACTTACAGATGA
Found at i:13372 original size:42 final size:41
Alignment explanation
Indices: 13281--13376 Score: 111
Period size: 42 Copynumber: 2.3 Consensus size: 41
13271 GATCTTATGT
* * * * *
13281 ATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACAG
1 ATGGCCCGAAGGAATTACCATCATGCTCGAAAGACTTACAG
* * *
13322 ATGACCCGAAGGAATTAACCATCATGCTCGAAAGACTTCCTG
1 ATGGCCCGAAGGAATT-ACCATCATGCTCGAAAGACTTACAG
13364 ATGGCCCGAAGGA
1 ATGGCCCGAAGGA
13377 CTTATAAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 14 0.31
42 31 0.69
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (41 bp):
ATGGCCCGAAGGAATTACCATCATGCTCGAAAGACTTACAG
Found at i:13588 original size:42 final size:41
Alignment explanation
Indices: 13493--13592 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
13483 AAAGTTTTAG
* *
13493 GATGGCCCGAAGGACTTGTCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
* * * **
13534 GATGACCGGAAGGATTTAAG-CATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT--GTCATCATGCTCGAAAGACTTACA
13576 GATGGCCCGAAGGACTT
1 GATGGCCCGAAGGACTT
13593 ATAAATTGTG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
41 14 0.30
42 32 0.68
43 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTGTCATCATGCTCGAAAGACTTACA
Found at i:14657 original size:42 final size:42
Alignment explanation
Indices: 14560--14665 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
14550 CCCGAAGGTT
* * * * * *
14560 TTACAGATTGCCCGAAGGACTT-ATCATCTTGCTCTAAAGGC
1 TTACAGATGGCCCGAAGGAATTAACCATCATGCTCGAAAGAC
*
14601 TTACAGATGACCCGAAGGAATTAACCATCATGCTCGAAAGAC
1 TTACAGATGGCCCGAAGGAATTAACCATCATGCTCGAAAGAC
* *
14643 TTCCTGATGGCCCGAAGGAATTA
1 TTACAGATGGCCCGAAGGAATTA
14666 TAAATTGTGA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 19 0.35
42 35 0.65
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (42 bp):
TTACAGATGGCCCGAAGGAATTAACCATCATGCTCGAAAGAC
Found at i:15088 original size:42 final size:41
Alignment explanation
Indices: 14988--15093 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 41
14978 CCCGAAGGTT
* * * *
14988 TTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGC
1 TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
* * *
15029 TTACAGATGACCCGAAGGATTTAAGCATCATGCT-TGAAAGAC
1 TTATAGATGGCCCGAAGGACTT-AGCATCATGCTCT-AAAGAC
*
15071 TTATTGATGGCCCGAAGGACTTA
1 TTATAGATGGCCCGAAGGACTTA
15094 TAAATTGTGA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (41 bp):
TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
Found at i:15490 original size:42 final size:41
Alignment explanation
Indices: 15420--15521 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 41
15410 AGGTCTTATG
* * * *
15420 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
* **
15461 GATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTATT
1 GATGACCCGAAGGACTT-ATCATCATGCTCGAAAGACTTACA
* *
15503 GATGGCCCAAAGGACTTAT
1 GATGACCCGAAGGACTTAT
15522 AAATTGTGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (41 bp):
GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
Found at i:17440 original size:42 final size:41
Alignment explanation
Indices: 17340--17445 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 41
17330 CCCGAAGGTT
* * * *
17340 TTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGC
1 TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
* * *
17381 TTACAGATGACCCGAAGGATTTAAGCATCATGCT-TGAAAGAC
1 TTATAGATGGCCCGAAGGACTT-AGCATCATGCTCT-AAAGAC
*
17423 TTATTGATGGCCCGAAGGACTTA
1 TTATAGATGGCCCGAAGGACTTA
17446 TAAATTGTGA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (41 bp):
TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
Found at i:17824 original size:41 final size:41
Alignment explanation
Indices: 17774--17875 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
17764 AGGTCTTATG
* * *
17774 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
* * **
17815 GATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT-ATCATCATGCTCGAAAGACTTACA
*
17857 GATGGCCCAAAGGACTTAT
1 GATGGCCCGAAGGACTTAT
17876 AAATTGTGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
Found at i:18721 original size:42 final size:41
Alignment explanation
Indices: 18629--18729 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
18619 AAAGTTTTAG
* * * *
18629 GATGGCCCGAAGGACTTATCATCTTGTTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
* * * **
18670 AATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
18712 GATGGCCCGAAGGACTTA
1 GATGGCCCGAAGGACTTA
18730 TAAATTGTGA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 15 0.32
42 32 0.68
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:19366 original size:42 final size:41
Alignment explanation
Indices: 19266--19371 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 41
19256 CCCGAAGGTT
* * * *
19266 TTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGC
1 TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
* * *
19307 TTACAGATGACCCGAAGGATTTAAGCATCATGCT-TGAAAGAC
1 TTATAGATGGCCCGAAGGACTT-AGCATCATGCTCT-AAAGAC
*
19349 TTATTGATGGCCCGAAGGACTTA
1 TTATAGATGGCCCGAAGGACTTA
19372 TAAATTGTGA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
41 20 0.38
42 32 0.62
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (41 bp):
TTATAGATGGCCCGAAGGACTTAGCATCATGCTCTAAAGAC
Found at i:19770 original size:42 final size:41
Alignment explanation
Indices: 19700--19801 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 41
19690 AGGTCTTATG
* * * *
19700 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTACA
1 GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
* **
19741 GATGACCCGAAGGATTTCATCATCATGCTCGAAAGACTTATT
1 GATGACCCGAAGGACTT-ATCATCATGCTCGAAAGACTTACA
* *
19783 GATGGCCCAAAGGACTTAT
1 GATGACCCGAAGGACTTAT
19802 AAATTGTGAA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 17 0.34
42 33 0.66
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (41 bp):
GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTACA
Found at i:21078 original size:42 final size:41
Alignment explanation
Indices: 20986--21086 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
20976 AAAGTTTTAG
* * * *
20986 GATGGCCCGAAGGACTTATCATCTTGTTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
* * * **
21027 AATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
21069 GATGGCCCGAAGGACTTA
1 GATGGCCCGAAGGACTTA
21087 TAAATTGTGA
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 15 0.32
42 32 0.68
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:22343 original size:42 final size:41
Alignment explanation
Indices: 22268--22347 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
22258 AAGTTTTAGG
* * *
22268 ATGACCCGAAAGACTTATCATCTTGCTCTAAAGACTTACAA
1 ATGACCCGAAAGACTTAGCATCATGCTCGAAAGACTTACAA
* *
22309 ATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTA
1 ATGACCCGAAAGACTT-AGCATCATGCTCGAAAGACTTA
22348 TTGATGGCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 14 0.42
42 19 0.58
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (41 bp):
ATGACCCGAAAGACTTAGCATCATGCTCGAAAGACTTACAA
Found at i:22555 original size:42 final size:41
Alignment explanation
Indices: 22484--22579 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 41
22474 TTTAGGATAG
* * *
22484 CCCGAAGGACTTATCATCTTGCTCTAAAGACTTACAGATGA
1 CCCGAAGGACTTAGCATCATGCTCGAAAGACTTACAGATGA
* ** *
22525 CCCGAAGGATTTAAGCATCATGCTCGAAAGACTTATTGATGG
1 CCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACAGATGA
22567 CCCGAAGGACTTA
1 CCCGAAGGACTTA
22580 TAAATTGTGA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 12 0.26
42 34 0.74
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (41 bp):
CCCGAAGGACTTAGCATCATGCTCGAAAGACTTACAGATGA
Found at i:22762 original size:42 final size:41
Alignment explanation
Indices: 22692--22793 Score: 132
Period size: 42 Copynumber: 2.5 Consensus size: 41
22682 AAAGTTTTAG
* * *
22692 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTATA
1 GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTATA
* * *
22733 GATGACCTGAAGGATTTAATCATCATGCTCGAAAGACTTATT
1 GATGACCCGAAGGACTT-ATCATCATGCTCGAAAGACTTATA
*
22775 GATGGCCCGAAGGACTTAT
1 GATGACCCGAAGGACTTAT
22794 AAATTGTGAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 16 0.31
42 35 0.69
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (41 bp):
GATGACCCGAAGGACTTATCATCATGCTCGAAAGACTTATA
Found at i:23428 original size:42 final size:41
Alignment explanation
Indices: 23332--23433 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
23322 AAGGTTTTAT
*
23332 TGATGGCCCGAAGGACTTATCATATTGCTCTAAAGGCTTAC
1 TGATGGCCCGAAGGACTTAGCATATTGCTCTAAAGGCTTAC
* * *
23373 AGATGACCCGAAGGATTTAAGCATCA-TGCT-TGAAAGAG-TTAC
1 TGATGGCCCGAAGGACTT-AGCAT-ATTGCTCT-AAAG-GCTTAC
23415 TGATGGCCCGAAGGACTTA
1 TGATGGCCCGAAGGACTTA
23434 TAAATTATGA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
41 17 0.34
42 31 0.62
43 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (41 bp):
TGATGGCCCGAAGGACTTAGCATATTGCTCTAAAGGCTTAC
Found at i:23811 original size:41 final size:41
Alignment explanation
Indices: 23765--23863 Score: 101
Period size: 42 Copynumber: 2.4 Consensus size: 41
23755 TTTAGGATGT
* *
23765 CCCGAAGGACTTATAATCTTGCTCTAAAGACTTACAAACGA
1 CCCGAAGGACTTATAATCATGCTCGAAAGACTTACAAACGA
** ** * *
23806 CCCGAAGGTTTTA-AGCATCATGCTCGAAAGACTTACTGATGG
1 CCCGAAGGACTTATA--ATCATGCTCGAAAGACTTACAAACGA
23848 CCCGAAGGACTTATAA
1 CCCGAAGGACTTATAA
23864 ATTATGAAAT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
40 1 0.02
41 12 0.27
42 31 0.69
43 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (41 bp):
CCCGAAGGACTTATAATCATGCTCGAAAGACTTACAAACGA
Found at i:31255 original size:20 final size:20
Alignment explanation
Indices: 31230--31267 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31220 TTTTGGTGCA
*
31230 GAGGGAATCGATACCCCCAT
1 GAGGGAACCGATACCCCCAT
*
31250 GAGGGAACCGATTCCCCC
1 GAGGGAACCGATACCCCC
31268 TTTGAAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (20 bp):
GAGGGAACCGATACCCCCAT
Found at i:31281 original size:23 final size:23
Alignment explanation
Indices: 31252--31313 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
31242 ACCCCCATGA
31252 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
*
31275 GGGAACCGATTCCCCTTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
31298 GGGAACCGATTCCCCC
1 GGGAACCGATTCCCCC
31314 CACAGGGGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:33652 original size:13 final size:14
Alignment explanation
Indices: 33634--33663 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
33624 TAAGGGGGAG
33634 TAATTTCAAAA-CT
1 TAATTTCAAAATCT
33647 TAATTTCAAAATCT
1 TAATTTCAAAATCT
33661 TAA
1 TAA
33664 AATTACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATTTCAAAATCT
Found at i:34065 original size:21 final size:20
Alignment explanation
Indices: 34026--34063 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
34016 AGTATGCTCG
34026 GAGGGAACCGATTCCCCCTA
1 GAGGGAACCGATTCCCCCTA
*
34046 GAGGGTACCGATTCCCCC
1 GAGGGAACCGATTCCCCC
34064 CTGTGTAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (20 bp):
GAGGGAACCGATTCCCCCTA
Found at i:34838 original size:37 final size:37
Alignment explanation
Indices: 34761--34868 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
34751 AACAGATTCC
* *
34761 CTCCTTTTTAGTGAAGGCTTAAGA-TGGTTTGCTTCA
1 CTCCTTTTTGGTGAAGGCTTAAGATTGATTTGCTTCA
*
34797 CTCCTCTTTGGTGAAGGCTTAAGATTGATTTGCTTCA
1 CTCCTTTTTGGTGAAGGCTTAAGATTGATTTGCTTCA
34834 CTCCTTTTTGGTGAAGGCTTAAGATTGACTTTGCT
1 CTCCTTTTTGGTGAAGGCTTAAGATTGA-TTTGCT
34869 CCAATCTCAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
36 22 0.33
37 38 0.58
38 6 0.09
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (37 bp):
CTCCTTTTTGGTGAAGGCTTAAGATTGATTTGCTTCA
Found at i:40470 original size:21 final size:21
Alignment explanation
Indices: 40415--40470 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
40405 ACCTCCAATG
*
40415 CGAAGTGGTCTTCATGTCTTTA
1 CGAA-TGGTCTTCTTGTCTTTA
*
40437 TGAATGGTCTTCTTGTCTTTA
1 CGAATGGTCTTCTTGTCTTTA
40458 CGAATGGTCTTCT
1 CGAATGGTCTTCT
40471 CGTCCTTGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
21 28 0.90
22 3 0.10
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.45
Consensus pattern (21 bp):
CGAATGGTCTTCTTGTCTTTA
Found at i:43904 original size:3 final size:3
Alignment explanation
Indices: 43892--43968 Score: 54
Period size: 3 Copynumber: 27.0 Consensus size: 3
43882 TGTAAACGTT
* * * *
43892 ATA A-A ATA ATA ATA TTA ATA ATA ATT ATA AT- TTT ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
43938 ATT ATA AT- ACA ATA ATT ATT ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
43969 TTTATTTTCC
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
2 6 0.11
3 51 0.89
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (3 bp):
ATA
Found at i:43935 original size:14 final size:15
Alignment explanation
Indices: 43896--43973 Score: 70
Period size: 17 Copynumber: 5.0 Consensus size: 15
43886 AACGTTATAA
*
43896 AATAATAATATTAAT
1 AATAATAATATTTAT
*
43911 AATAATTATAATTTTAT
1 AATAATAAT-A-TTTAT
*
43928 AATAATAATAATTAT
1 AATAATAATATTTAT
43943 AATACAATAAT-TATTAT
1 AAT--AATAATAT-TTAT
43960 AAT-ATAATATTTAT
1 AATAATAATATTTAT
43974 TTTCCGGACA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
14 9 0.17
15 16 0.31
16 2 0.04
17 25 0.48
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAATAATATTTAT
Found at i:43952 original size:23 final size:23
Alignment explanation
Indices: 43902--43968 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
43892 ATAAAATAAT
* **
43902 AATATTAATAATAATTATAATTT
1 AATAATAATAATAATTATAATAC
*
43925 TATAATAATAATAATTATAATAC
1 AATAATAATAATAATTATAATAC
* *
43948 AATAATTATTATAA-TATAATA
1 AATAATAATAATAATTATAATA
43969 TTTATTTTCC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 7 0.19
23 30 0.81
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (23 bp):
AATAATAATAATAATTATAATAC
Found at i:48800 original size:12 final size:12
Alignment explanation
Indices: 48783--48812 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
48773 ATTAGAATCA
48783 AGTGATAAGTCT
1 AGTGATAAGTCT
48795 AGTGATAAGTCT
1 AGTGATAAGTCT
48807 AGTGAT
1 AGTGAT
48813 TTATGGAGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (12 bp):
AGTGATAAGTCT
Found at i:49859 original size:14 final size:15
Alignment explanation
Indices: 49842--49870 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49832 TACATGATAT
49842 GCAT-AAACATAAGA
1 GCATAAAACATAAGA
49856 GCATAAAACATAAGA
1 GCATAAAACATAAGA
49871 TATATGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
GCATAAAACATAAGA
Found at i:50194 original size:22 final size:21
Alignment explanation
Indices: 50140--50203 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
50130 AGTCGAGGGT
*
50140 TTCATAGGTCCTTTGGGACAA
1 TTCATAGGTCCTTCGGGACAA
*
50161 CTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACA-A
*
50183 TTCACAGGTCCTTCGGGACAA
1 TTCATAGGTCCTTCGGGACAA
50204 ATTTCATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 19 0.50
22 19 0.50
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
TTCATAGGTCCTTCGGGACAA
Found at i:51023 original size:7 final size:7
Alignment explanation
Indices: 50987--51022 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
50977 TATTCATCAT
50987 ACTATTC
1 ACTATTC
*
50994 ACTGTTC
1 ACTATTC
51001 ACTATTC
1 ACTATTC
51008 ACTATTC
1 ACTATTC
*
51015 ATTATTC
1 ACTATTC
51022 A
1 A
51023 TACAGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44
Consensus pattern (7 bp):
ACTATTC
Found at i:55802 original size:14 final size:15
Alignment explanation
Indices: 55785--55813 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
55775 TACATGATAT
55785 GCAT-AAACATAAGA
1 GCATAAAACATAAGA
55799 GCATAAAACATAAGA
1 GCATAAAACATAAGA
55814 TATATGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 4 0.29
15 10 0.71
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
GCATAAAACATAAGA
Found at i:56140 original size:22 final size:21
Alignment explanation
Indices: 56086--56149 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
56076 AATCGAGGGT
*
56086 TTCATAGGTCCTTTGGGACAA
1 TTCATAGGTCCTTCGGGACAA
*
56107 CTCATAGGTCCTTCGGGACATA
1 TTCATAGGTCCTTCGGGACA-A
*
56129 TTCACAGGTCCTTCGGGACAA
1 TTCATAGGTCCTTCGGGACAA
56150 ATTTCATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 19 0.50
22 19 0.50
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
TTCATAGGTCCTTCGGGACAA
Found at i:56969 original size:7 final size:7
Alignment explanation
Indices: 56933--56968 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
56923 TATTCATCAT
56933 ACTATTC
1 ACTATTC
*
56940 ACTGTTC
1 ACTATTC
56947 ACTATTC
1 ACTATTC
56954 ACTATTC
1 ACTATTC
*
56961 ATTATTC
1 ACTATTC
56968 A
1 A
56969 TACAGTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44
Consensus pattern (7 bp):
ACTATTC
Found at i:60957 original size:17 final size:16
Alignment explanation
Indices: 60935--60968 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
60925 AATTAACATG
60935 ATTAAAAATATTTATTA
1 ATTAAAAATATTT-TTA
*
60952 ATTAAATATATTTTTA
1 ATTAAAAATATTTTTA
60968 A
1 A
60969 AAAATAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTAAAAATATTTTTA
Found at i:61881 original size:23 final size:23
Alignment explanation
Indices: 61848--61900 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
61838 TATGACATGT
* * **
61848 TCTCTGCCTTTATGTCATGTTTA
1 TCTCTGTCTTTATGGCACATTTA
61871 TCTCTGTCTTTATGGCACATTTA
1 TCTCTGTCTTTATGGCACATTTA
61894 TCTCTGT
1 TCTCTGT
61901 ATTTGTAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.51
Consensus pattern (23 bp):
TCTCTGTCTTTATGGCACATTTA
Found at i:63535 original size:20 final size:20
Alignment explanation
Indices: 63512--63588 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
63502 CAACGGGAAC
*
63512 TCCAATTTCGCAACACAGTT
1 TCCAAATTCGCAACACAGTT
* * *
63532 TCCAAATTCGTAACGCGATTT
1 TCCAAATTCGCAACAC-AGTT
*
63553 TCCAAATTCGCAACGC-GATT
1 TCCAAATTCGCAACACAG-TT
*
63573 TCCAAATTCGTAACAC
1 TCCAAATTCGCAACAC
63589 TGAATTTGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
20 29 0.62
21 18 0.38
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.29
Consensus pattern (20 bp):
TCCAAATTCGCAACACAGTT
Found at i:63554 original size:21 final size:20
Alignment explanation
Indices: 63530--63586 Score: 96
Period size: 21 Copynumber: 2.8 Consensus size: 20
63520 CGCAACACAG
63530 TTTCCAAATTCGTAACGCGA
1 TTTCCAAATTCGTAACGCGA
*
63550 TTTTCCAAATTCGCAACGCGA
1 -TTTCCAAATTCGTAACGCGA
63571 TTTCCAAATTCGTAAC
1 TTTCCAAATTCGTAAC
63587 ACTGAATTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (20 bp):
TTTCCAAATTCGTAACGCGA
Found at i:63615 original size:41 final size:41
Alignment explanation
Indices: 63512--63615 Score: 120
Period size: 41 Copynumber: 2.5 Consensus size: 41
63502 CAACGGGAAC
* * * *
63512 TCCAATTTCGCAACACAGTTTCCAAATTCGTAACGCGATTT
1 TCCAAATTCGCAACACAATTTCCAAATTCGTAACACGAATT
* *
63553 TCCAAATTCGCAACGCGATTTCCAAATTCGTAACACTGAATT
1 TCCAAATTCGCAACACAATTTCCAAATTCGTAACAC-GAATT
* *
63595 T-GAAATTCGCAACTCAATTTC
1 TCCAAATTCGCAACACAATTTC
63616 TTAATTTGTA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 48 0.91
42 5 0.09
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.31
Consensus pattern (41 bp):
TCCAAATTCGCAACACAATTTCCAAATTCGTAACACGAATT
Found at i:63683 original size:40 final size:40
Alignment explanation
Indices: 63559--63683 Score: 103
Period size: 40 Copynumber: 3.1 Consensus size: 40
63549 ATTTTCCAAA
* * * **
63559 TTCGCAACGCGATTTCCAAATTCGTAACACTGAATTTGAAA
1 TTCGCAACTCGATTTTCAAATTCGTAACAC-GAATTTTAGT
* * *
63600 TTCGCAACTC-AATTTCTTAATTTGTAACGAC-AATTTT-GTT
1 TTCGCAACTCGATTTTC-AAATTCGTAAC-ACGAATTTTAG-T
* *
63640 TTCGCAACTCGATTTTCGAATTCGCAACACGAATTTTAGT
1 TTCGCAACTCGATTTTCAAATTCGTAACACGAATTTTAGT
63680 TTCG
1 TTCG
63684 TACCAGGTTT
Statistics
Matches: 66, Mismatches: 12, Indels: 13
0.73 0.13 0.14
Matches are distributed among these distances:
39 2 0.03
40 38 0.58
41 24 0.36
42 2 0.03
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (40 bp):
TTCGCAACTCGATTTTCAAATTCGTAACACGAATTTTAGT
Found at i:63863 original size:14 final size:15
Alignment explanation
Indices: 63844--63881 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
63834 TCCCCATCTC
63844 TAATTTTTTT-TACA
1 TAATTTTTTTCTACA
*
63858 TAATTTTATTTCTATA
1 TAATTTT-TTTCTACA
63874 TAATTTTT
1 TAATTTTT
63882 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTCTACA
Found at i:68787 original size:21 final size:20
Alignment explanation
Indices: 68761--68878 Score: 101
Period size: 21 Copynumber: 5.7 Consensus size: 20
68751 GTGAATCAGG
*
68761 CTCTTGAACGGTGGGAGGGAC
1 CTCTTGAACGATGGGAGGG-C
* **
68782 CTCTTGAATGATGACAGGGGC
1 CTCTTGAACGATGGGA-GGGC
*
68803 CTCTTGAACGGTGGGAGAGGC
1 CTCTTGAACGATGGGAG-GGC
* *
68824 TTCTTGAACGATGAGAAGGGC
1 CTCTTGAACGATG-GGAGGGC
** *
68845 CTCTTGAACGATAAGAGGGGT
1 CTCTTGAACGATGGGA-GGGC
68866 CTCTTGAACGATG
1 CTCTTGAACGATG
68879 ACAGGTGAAT
Statistics
Matches: 76, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
20 2 0.03
21 68 0.89
22 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.23
Consensus pattern (20 bp):
CTCTTGAACGATGGGAGGGC
Found at i:68829 original size:42 final size:42
Alignment explanation
Indices: 68761--68881 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
68751 GTGAATCAGG
* *
68761 CTCTTGAACGGTGGGAGGGACCTCTTGAATGATGACAGGGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAAGGGC
* *
68803 CTCTTGAACGGTGGGAGAGG-CTTCTTGAACGATGAGAAGGGC
1 CTCTTGAACGGTGGGAG-GGACCTCTTGAACGATGACAAGGGC
* ** **
68845 CTCTTGAACGATAAGAGGGGTCTCTTGAACGATGACA
1 CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACA
68882 GGTGAATTAG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 2 0.03
42 63 0.94
43 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTGAACGATGACAAGGGC
Found at i:68864 original size:63 final size:62
Alignment explanation
Indices: 68758--68875 Score: 157
Period size: 63 Copynumber: 1.9 Consensus size: 62
68748 CATGTGAATC
* * * *
68758 AGGCTCTTGAACGGTGGGAGGGACCTCTTGAATGATGACAGGGGCCTCTTGAACGGTGGGAG
1 AGGCTCTTGAACGATGGAAGGGACCTCTTGAACGATAACAGGGGCCTCTTGAACGGTGGGAG
* *
68820 AGGCTTCTTGAACGATGAGAAGGG-CCTCTTGAACGATAAGAGGGGTCTCTTGAACG
1 AGGC-TCTTGAACGATG-GAAGGGACCTCTTGAACGATAACAGGGGCCTCTTGAACG
68876 ATGACAGGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
62 4 0.08
63 39 0.81
64 5 0.10
ACGTcount: A:0.24, C:0.18, G:0.36, T:0.22
Consensus pattern (62 bp):
AGGCTCTTGAACGATGGAAGGGACCTCTTGAACGATAACAGGGGCCTCTTGAACGGTGGGAG
Found at i:69298 original size:63 final size:63
Alignment explanation
Indices: 69178--69299 Score: 140
Period size: 63 Copynumber: 1.9 Consensus size: 63
69168 CGTAGAGCGG
* * *
69178 CTACCTCATCACGTAAAGTACATACCTCACCACGTAAAGCACCATTGTCATTGCGTAAAACAT
1 CTACCTCACCACGTAAAGTACATACCTCACCACGCAAAGCACCATTGTCAGTGCGTAAAACAT
* * * * *
69241 CTACCTCACCACGTAAAG-ACCGTACCTCATCACGCCATGCATCATTGTC-GTGACGTAAA
1 CTACCTCACCACGTAAAGTA-CATACCTCACCACGCAAAGCACCATTGTCAGTG-CGTAAA
69300 GTGCCGACCT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
62 3 0.06
63 46 0.94
ACGTcount: A:0.32, C:0.32, G:0.13, T:0.23
Consensus pattern (63 bp):
CTACCTCACCACGTAAAGTACATACCTCACCACGCAAAGCACCATTGTCAGTGCGTAAAACAT
Found at i:70902 original size:20 final size:20
Alignment explanation
Indices: 70879--70917 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70869 TCGCGTTGCG
* *
70879 ATTTTCGTGTTTCGAATTTC
1 ATTTTCATGTTGCGAATTTC
70899 ATTTTCATGTTGCGAATTT
1 ATTTTCATGTTGCGAATTT
70918 AAGTTTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.15, T:0.54
Consensus pattern (20 bp):
ATTTTCATGTTGCGAATTTC
Found at i:70924 original size:20 final size:20
Alignment explanation
Indices: 70881--70925 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
70871 GCGTTGCGAT
* * * *
70881 TTTCGTGTTTCGAATTTCAT
1 TTTCATGTTGCGAATTTAAG
70901 TTTCATGTTGCGAATTTAAG
1 TTTCATGTTGCGAATTTAAG
70921 TTTCA
1 TTTCA
70926 AAAACTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.13, G:0.16, T:0.51
Consensus pattern (20 bp):
TTTCATGTTGCGAATTTAAG
Found at i:71275 original size:22 final size:22
Alignment explanation
Indices: 71247--71325 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
71237 GAGATGGATA
*
71247 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
* *
71269 GACGGATTTTGTCAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
* **
71291 GACGGATTTTGTTAGAGATGGG
1 GACGGATTTCGCCAGAGATGGG
* *
71313 GACAGATGTCGCC
1 GACGGATTTCGCC
71326 GTAGAGTGAG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.22, C:0.14, G:0.41, T:0.24
Consensus pattern (22 bp):
GACGGATTTCGCCAGAGATGGG
Found at i:71853 original size:32 final size:31
Alignment explanation
Indices: 71785--71845 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
71775 GATCCGAATT
* *
71785 CGACCCAAAATTATATAGCCTCCATCTGACC
1 CGACCCAAAAATATATAGCCTCCACCTGACC
*
71816 CGACCCAAAAAATATATATCC-CCACCTGAC
1 CGACCC-AAAAATATATAGCCTCCACCTGAC
71846 TCTGACCCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 14 0.54
32 12 0.46
ACGTcount: A:0.36, C:0.36, G:0.08, T:0.20
Consensus pattern (31 bp):
CGACCCAAAAATATATAGCCTCCACCTGACC
Done.