genome.fa.s7436.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007436.1 Hibiscus syriacus cultivar Beakdansim tig00020266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132912

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4234--4277	20	2.1	21	87	8	63	61	9	9	20	1.53
10260--10307	24	2.0	24	100	0	96	29	8	12	50	1.69
18924--18982	21	2.8	21	86	0	82	20	16	33	28	1.95
20638--20715	35	2.2	35	81	6	86	66	1	1	30	1.07
24528--24595	31	2.2	31	86	0	91	39	14	10	35	1.80
25120--25195	35	2.2	35	100	0	152	51	2	5	40	1.38
31531--31767	115	2.1	115	100	0	474	25	14	29	31	1.95
31560--31791	115	2.0	113	89	4	338	27	13	28	30	1.94
31935--32007	32	2.3	32	78	0	83	23	5	35	35	1.78
35657--35747	20	4.9	20	68	20	72	32	6	15	45	1.72
35656--35781	53	2.4	53	94	1	218	32	6	13	47	1.68
40351--40493	20	7.9	20	64	23	75	33	5	14	46	1.68
40350--40527	52	3.4	52	97	0	329	33	5	13	47	1.66
43231--43348	60	2.0	60	84	1	157	30	12	14	42	1.83
45401--45632	117	2.0	117	100	0	464	41	9	9	39	1.70
45837--45886	21	2.4	22	80	10	68	54	8	2	36	1.42
47979--48368	42	9.4	42	79	5	317	35	16	17	30	1.92
47981--48240	81	3.1	82	81	3	272	36	16	17	29	1.92
50466--50506	20	2.0	20	86	9	57	29	0	4	65	1.13
51573--51615	22	2.0	22	85	0	59	51	0	0	48	1.00
52843--52935	21	4.5	21	78	4	100	39	18	24	17	1.91
52843--52935	41	2.3	41	100	0	186	39	18	24	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52862--52996	41	3.3	41	82	6	132	38	20	21	19	1.94
52924--53038	20	5.7	20	76	5	88	36	22	16	24	1.94
53206--53249	22	2.0	22	95	0	79	20	45	15	18	1.85
53511--53548	20	1.9	20	88	0	58	13	15	21	50	1.78
54715--54759	18	2.5	18	85	0	63	26	42	15	15	1.87
54946--55001	20	2.8	20	81	2	69	41	21	21	16	1.90
54990--55029	14	2.9	14	96	0	71	50	25	15	10	1.74
55063--55120	14	3.9	14	79	16	71	8	17	25	48	1.75
55058--55128	32	2.2	33	97	2	135	8	19	23	47	1.77
55121--55174	20	2.8	19	86	5	72	18	25	22	33	1.97
55109--55174	19	3.4	19	79	4	78	16	24	22	36	1.94
57007--57041	14	2.5	14	85	0	52	31	0	20	48	1.50
57183--57239	20	2.8	20	91	0	87	19	22	19	38	1.93
57743--57809	18	3.8	19	81	18	92	46	17	22	13	1.83
57828--57885	20	2.9	20	94	0	98	17	22	22	37	1.93
59485--59568	42	2.0	42	83	4	107	22	16	38	22	1.93
60006--60044	21	1.9	21	85	15	55	33	33	17	15	1.92
61585--61682	33	2.9	33	89	1	142	39	25	23	11	1.88
61560--61744	19	10.1	19	78	14	183	43	21	22	12	1.86
62331--62380	20	2.5	20	93	0	82	26	20	28	26	1.99
62392--62445	20	2.7	20	97	0	99	25	18	24	31	1.97
62332--62448	61	1.9	61	83	0	153	23	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62332--62466	61	2.2	61	80	2	146	22	19	24	33	1.97
65064--65112	26	1.9	26	84	12	66	75	2	2	20	1.00
71611--71680	35	2.0	36	94	2	124	17	27	34	21	1.95
71874--71913	20	2.0	20	90	4	64	55	7	0	37	1.29
77342--77416	38	2.0	37	84	5	98	48	4	1	46	1.29
78512--78571	13	4.8	12	79	6	66	48	18	3	30	1.64
78486--78570	25	3.4	25	83	4	100	48	18	3	29	1.65
78644--78675	13	2.5	13	94	0	55	53	9	0	37	1.34
80653--80909	42	6.1	42	92	2	399	33	22	23	20	1.97
87248--87308	21	2.9	21	90	0	86	26	13	27	32	1.93
92062--92146	42	2.0	42	95	0	152	27	15	21	36	1.93
96340--96391	3	17.7	3	82	4	61	59	1	3	34	1.27
96550--96887	43	7.8	43	70	13	208	24	19	30	25	1.98
96592--96915	130	2.5	132	91	2	528	24	18	30	25	1.98
96765--96925	83	1.9	83	87	7	232	24	19	31	24	1.98
97449--97818	67	5.5	67	96	0	659	44	12	12	30	1.80
97767--97901	30	4.7	29	80	7	141	43	15	10	30	1.80
98155--98242	36	2.5	36	81	5	92	36	10	19	34	1.85
98185--98258	36	2.1	36	82	5	87	36	12	21	29	1.90
98210--98442	105	2.3	101	85	8	292	37	12	19	30	1.89
99081--99112	14	2.4	14	94	5	57	28	31	9	31	1.88
106370--106421	3	17.7	3	84	4	70	61	1	3	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109724--109777	22	2.4	23	78	9	67	46	0	1	51	1.11
110616--110766	79	1.9	77	86	2	212	33	15	25	25	1.96
113974--114027	16	3.2	16	82	10	56	29	0	1	68	1.00
114124--114148	2	12.5	2	100	0	50	48	0	0	52	1.00
114200--114250	16	3.3	15	89	8	68	9	7	0	82	0.85
114198--114244	23	2.0	23	88	8	69	10	6	0	82	0.82
114246--114283	15	2.4	16	86	8	51	18	13	0	68	1.21
114200--114400	11	17.6	11	66	20	60	18	7	1	72	1.18
114309--114406	32	3.1	32	81	11	105	23	5	2	69	1.19
118209--118405	99	2.0	99	86	2	279	34	17	17	30	1.93
119459--119780	156	2.1	156	87	1	457	37	20	14	27	1.92
119732--119896	62	2.7	63	83	10	198	37	20	14	27	1.91
120016--120609	85	7.0	85	79	3	550	35	20	17	26	1.95
120026--120511	255	1.9	254	83	5	640	33	20	18	26	1.96
120026--120595	255	2.2	254	80	5	632	34	20	18	26	1.96
122626--122679	22	2.5	22	80	14	58	29	1	0	68	1.00
122741--122814	30	2.5	30	78	12	89	27	6	0	66	1.17
122870--122896	4	6.8	4	100	0	54	0	22	0	77	0.76
123054--123098	10	4.7	10	81	13	51	13	6	2	77	1.05
123010--123098	44	2.0	44	84	4	117	13	6	4	75	1.16
122950--123094	14	9.8	14	67	18	62	17	5	4	72	1.20
126273--126308	17	2.1	17	94	0	63	44	27	5	22	1.75

Tables:   1

The End!