genome.fa.s7437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007437.1 Hibiscus syriacus cultivar Beakdansim tig00020272_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91850

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220--298	30	2.6	30	89	0	113	30	7	22	39	1.82
216--299	15	5.6	15	70	16	57	29	7	22	40	1.81
401--472	24	3.0	24	81	0	99	20	25	23	30	1.99
474--525	24	2.2	24	82	0	59	23	15	26	34	1.94
2660--2710	22	2.3	22	93	0	84	19	7	21	50	1.72
3492--3546	20	2.8	20	81	13	60	30	20	10	38	1.87
6988--7046	15	3.9	15	77	0	64	27	11	25	35	1.91
6979--7055	30	2.6	30	85	0	100	25	9	25	38	1.85
7228--7276	24	2.1	23	84	3	62	22	20	20	36	1.95
13807--13863	15	3.8	15	79	9	71	22	5	28	43	1.75
13799--13898	30	3.3	30	84	2	121	25	9	23	43	1.82
14007--14070	25	2.6	25	82	2	85	17	25	21	35	1.95
14007--14078	25	2.9	26	76	12	80	18	23	23	34	1.96
24214--24300	29	2.9	30	76	8	81	37	17	4	40	1.70
25197--25261	24	2.8	24	83	6	71	49	13	24	12	1.77
26602--26629	13	2.2	13	100	0	56	7	42	14	35	1.73
26718--26863	32	4.6	32	70	5	107	37	18	10	32	1.86
27181--27435	22	11.1	22	74	15	196	45	3	7	43	1.50
27181--27492	47	6.7	46	77	15	215	44	3	7	45	1.47
27177--27464	22	12.8	22	75	15	177	45	3	7	43	1.48
29889--29919	2	15.5	2	100	0	62	51	0	0	48	1.00
35203--35265	20	2.9	21	79	9	65	15	25	34	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39160--39231	33	2.1	34	82	7	85	27	15	6	50	1.69
45591--45688	36	2.7	36	73	6	99	32	15	9	42	1.78
46481--46822	104	3.3	103	76	8	291	35	23	14	26	1.93
47026--47092	3	22.7	3	96	3	127	34	0	0	65	0.93
48050--48089	20	2.1	19	85	4	53	22	15	12	50	1.77
52109--52148	20	2.1	19	85	4	53	20	17	12	50	1.78
59940--60032	23	4.0	23	82	8	98	34	24	20	20	1.96
64396--64896	179	2.8	174	76	9	460	38	12	9	39	1.76
68422--68623	22	9.3	21	72	17	130	44	4	8	42	1.56
68447--68657	89	2.4	85	80	10	228	45	4	9	41	1.55
68569--68601	17	1.9	17	93	0	57	36	9	6	48	1.60
68601--68676	27	2.9	27	84	11	95	50	5	9	35	1.57
68648--68702	21	2.5	23	76	5	60	45	5	7	41	1.55
71946--71984	17	2.5	15	84	12	51	58	0	30	10	1.31
73510--73554	18	2.6	18	89	3	65	28	28	6	35	1.83
76550--76630	41	2.0	41	90	0	126	32	18	19	29	1.96
76564--76634	21	3.4	21	67	11	65	33	19	16	29	1.94
80750--80816	2	33.5	2	100	0	134	49	0	0	50	1.00
88824--88869	15	3.1	15	78	12	58	65	0	4	30	1.12
88923--88984	2	32.5	2	75	15	51	43	3	4	48	1.40
89017--89052	2	18.5	2	94	5	65	50	0	0	50	1.00
90575--90703	46	2.8	48	82	6	149	29	21	6	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90808--90887	40	2.1	39	95	4	144	32	27	17	22	1.96

Tables:   1

The End!