Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007439.1 Hibiscus syriacus cultivar Beakdansim tig00020291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73817

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3903--3931
10
3.0
10
95
5
51
0
6
0
93
0.36
3905--3934
14
2.1
14
93
0
51
0
10
0
90
0.47
6841--6927
43
2.0
44
88
2
131
33
22
11
32
1.90
9516--9555
18
2.0
21
86
13
59
67
0
2
30
1.04
9571--9617
2
24.0
2
86
4
69
46
2
0
51
1.13
9705--9766
31
1.9
33
83
6
83
53
3
1
41
1.27
10881--10924
22
2.0
22
86
0
61
22
18
34
25
1.96
11208--11277
3
23.0
3
97
2
131
65
0
0
34
0.93
14192--14321
46
2.8
46
96
0
233
23
18
16
41
1.89
15064--15350
21
13.7
21
78
10
143
22
18
21
37
1.94
15083--15256
63
2.8
63
79
10
203
22
18
20
37
1.94
15064--15297
84
2.8
84
91
2
355
21
18
21
38
1.94
15064--15343
105
2.7
105
84
6
397
21
18
22
37
1.94
15083--15350
42
6.4
42
76
10
296
22
18
21
37
1.94
15083--15350
84
3.2
83
88
5
337
22
18
21
37
1.94
15960--15991
6
5.5
6
96
3
57
0
15
53
31
1.43
16084--16220
42
3.3
42
97
0
256
35
25
18
20
1.95
16084--16247
42
3.9
41
92
3
231
34
25
19
20
1.96
16084--16328
84
2.9
83
84
11
268
33
23
20
22
1.97
16081--16328
21
11.5
21
72
16
161
33
22
20
23
1.97
16179--16361
90
2.0
92
88
4
273
30
20
21
27
1.98
16312--16449
70
2.0
70
95
0
249
25
23
21
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16415--16469
21
2.6
21
94
0
92
20
21
27
30
1.98
17506--17557
2
26.0
2
100
0
104
50
0
0
50
1.00
21946--21972
4
6.8
4
100
0
54
51
22
0
25
1.48
27108--27193
3
28.7
3
85
0
118
60
0
4
34
1.17
27445--27992
113
4.8
113
89
0
839
28
19
13
38
1.90
28606--28950
82
4.2
81
92
2
537
36
21
13
29
1.91
30072--30168
6
16.0
6
71
25
71
2
16
0
81
0.79
30072--30168
25
4.0
24
79
18
103
2
16
0
81
0.79
30071--30169
30
3.5
27
78
18
96
2
18
0
79
0.82
30072--30165
44
2.2
44
86
7
131
2
15
0
81
0.78
40766--40807
18
2.4
17
84
11
50
69
4
0
26
1.08
50483--50518
18
2.1
17
89
5
54
75
0
0
25
0.81
54573--54644
36
2.0
35
83
2
90
45
9
16
27
1.79
62111--62395
149
1.9
149
85
1
392
33
19
26
20
1.96
63216--63314
49
2.0
49
98
0
189
43
17
14
25
1.86
64641--64696
12
4.8
12
76
8
53
39
14
23
23
1.91
64641--64715
34
2.2
34
95
0
132
38
16
24
21
1.92
65312--65372
22
2.8
22
87
0
77
24
24
19
31
1.98
70637--70768
22
6.0
22
96
0
237
46
15
18
19
1.85
70802--70842
20
2.0
21
95
4
75
24
31
19
24
1.98
71344--71391
3
17.0
3
79
12
57
64
0
31
4
1.12
71344--71395
17
3.1
17
91
0
86
63
0
30
5
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71344--71391
14
3.4
14
82
5
62
64
0
31
4
1.12

Tables:   1

The End!