genome.fa.s744.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000744.1 Hibiscus syriacus cultivar Beakdansim tig00001435_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85776

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111--176	33	1.9	35	90	9	109	48	24	10	16	1.78
8913--8942	3	9.7	3	92	7	51	33	0	0	66	0.92
9064--9137	31	2.4	31	97	2	139	39	13	14	32	1.86
17225--17323	29	3.5	29	73	9	80	69	0	6	24	1.10
17319--17373	18	2.8	19	81	8	58	63	3	1	30	1.22
17585--17622	19	2.0	19	85	10	51	63	0	2	34	1.09
18148--18286	37	3.8	37	88	0	197	30	14	13	41	1.85
18918--20611	106	16.0	106	90	1	2542	23	17	24	34	1.96
21188--21248	24	2.5	24	91	0	95	40	3	19	36	1.68
21445--21508	22	2.9	22	90	0	101	21	12	25	40	1.88
22115--22188	14	5.4	13	74	16	60	2	6	8	82	0.93
22115--22197	7	12.6	7	75	6	50	2	7	7	83	0.90
22117--22172	20	2.8	20	81	8	60	3	8	7	80	1.01
22148--22200	15	3.5	15	89	2	70	1	3	9	84	0.81
22115--22173	27	2.2	27	81	6	66	3	8	6	81	0.97
22115--22196	24	3.5	21	79	15	74	2	7	7	82	0.91
26647--26714	25	2.7	24	72	20	59	73	0	10	16	1.09
26666--26706	15	2.6	16	81	14	50	78	0	7	14	0.96
26728--26770	2	21.5	2	100	0	86	51	0	0	48	1.00
27029--27177	66	2.3	64	76	11	151	60	2	4	32	1.29
27620--27716	37	2.6	37	81	3	115	32	11	14	41	1.81
29177--30132	295	3.3	287	83	5	1142	40	10	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33389--33585	20	9.6	20	76	6	137	26	22	20	30	1.98
33486--33586	41	2.5	41	86	1	132	26	24	19	28	1.99
33750--33802	22	2.4	22	80	0	70	24	41	16	16	1.89
34199--34271	20	3.7	20	87	1	94	15	19	24	41	1.89
34188--34281	20	4.8	19	80	3	80	15	17	23	43	1.87
36252--36307	20	2.8	20	91	0	94	17	17	23	41	1.90
36252--36318	20	3.5	19	87	4	82	16	17	25	40	1.90
36810--36851	21	2.2	19	87	12	59	21	35	19	23	1.96
36805--36908	42	2.5	42	76	3	111	21	35	20	23	1.96
38261--38326	30	2.2	30	100	0	132	28	3	13	54	1.54
38476--38739	20	13.9	20	76	10	203	23	19	21	35	1.96
38481--38584	39	2.6	40	81	3	129	26	19	22	31	1.97
38518--38731	54	3.9	54	86	4	250	20	19	22	37	1.94
38914--38948	18	1.9	18	94	0	61	17	2	25	54	1.57
41209--41262	24	2.2	24	93	0	90	40	20	18	20	1.91
42069--42125	20	2.8	20	89	0	78	29	19	22	28	1.98
42087--42270	20	9.1	20	80	8	124	28	20	21	28	1.98
42087--42212	40	3.2	40	83	6	157	26	20	19	34	1.96
42211--42250	21	1.9	21	94	0	71	37	22	25	15	1.93
51467--51513	24	2.0	24	91	0	76	12	27	46	12	1.78
53706--54747	106	9.8	106	95	0	1789	22	18	25	33	1.97
59468--59514	24	2.0	24	91	0	76	12	27	46	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68629--68688	20	3.0	20	97	0	111	40	23	15	21	1.91
68680--68806	20	6.3	20	73	17	111	40	24	14	21	1.90
68614--68706	40	2.3	41	78	10	102	38	23	13	23	1.91
68660--68788	60	2.2	60	92	0	213	38	23	15	22	1.92
68692--68827	40	3.4	42	79	12	151	38	23	15	22	1.92
68677--68806	60	2.2	60	87	2	181	41	23	13	20	1.89
68794--68885	19	4.7	19	89	4	121	35	21	13	29	1.91
68794--68893	38	2.5	40	84	9	134	36	21	13	30	1.91
69019--69062	22	2.0	22	86	8	63	25	36	6	31	1.82
69692--69725	12	2.8	12	90	0	50	55	29	0	14	1.40
70175--70214	20	2.0	20	85	0	53	15	12	22	50	1.77
70549--70599	22	2.3	21	87	9	75	23	13	43	19	1.87
70701--70802	20	5.1	20	81	0	132	19	17	23	39	1.92
70704--70813	40	2.7	39	86	5	148	20	17	25	37	1.94
70705--70813	20	5.4	20	77	8	107	20	16	25	37	1.93
70703--70833	40	3.3	40	84	6	142	20	17	24	37	1.94
70807--70971	20	8.1	20	75	5	143	30	18	18	33	1.94
70809--70968	81	2.0	81	96	0	293	31	18	17	32	1.94
70829--70984	41	3.8	41	79	1	179	33	17	17	31	1.94
80418--80442	2	12.5	2	100	0	50	48	0	0	52	1.00
81350--81377	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!