Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007440.1 Hibiscus syriacus cultivar Beakdansim tig00020292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87319

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5485--5519
17
2.1
17
100
0
70
48
5
5
40
1.51
5485--5525
17
2.6
16
92
7
66
46
4
4
43
1.46
6861--7213
176
2.0
176
98
0
688
17
23
20
38
1.93
8854--8893
21
1.9
21
85
10
55
35
5
2
57
1.34
32877--32954
33
2.4
33
85
8
97
38
0
1
60
1.05
33094--33147
17
3.2
17
72
0
54
31
0
3
64
1.11
35569--35612
20
2.1
21
88
12
65
31
0
6
61
1.22
51020--51242
74
2.9
74
84
8
288
49
0
1
49
1.09
51186--51286
22
4.5
22
71
7
94
38
0
9
51
1.35
51020--51241
15
14.5
15
82
10
254
49
0
1
49
1.09
51221--51318
32
3.4
32
73
26
126
35
0
11
53
1.37
51221--51748
54
9.8
54
84
6
440
34
0
12
52
1.42
51266--51415
80
1.9
80
98
0
291
31
0
14
54
1.41
51378--51420
22
2.0
22
95
0
77
34
0
11
53
1.37
51221--51797
188
3.0
188
94
2
985
34
0
12
53
1.42
51432--51474
22
2.0
22
100
0
86
34
0
13
51
1.42
51620--51662
22
2.0
22
95
0
77
34
2
11
51
1.51
51248--51837
134
4.4
134
83
9
632
33
0
12
53
1.42
51538--51837
108
2.8
108
82
9
308
35
0
11
53
1.42
51817--51843
14
1.9
14
100
0
54
40
0
0
59
0.98
55032--55104
26
2.8
27
87
6
98
42
4
0
53
1.20
56853--56908
22
2.8
19
75
17
51
46
14
0
39
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57475--57500
2
13.0
2
100
0
52
50
0
0
50
1.00
60900--60949
22
2.3
22
92
0
82
32
22
24
22
1.98
62978--63007
2
15.0
2
100
0
60
50
0
0
50
1.00
63877--63901
2
12.5
2
100
0
50
52
0
0
48
1.00
64235--64268
2
16.0
2
88
11
50
47
0
5
47
1.26
69605--69647
19
2.1
22
87
12
65
72
2
2
23
1.08
78959--79238
141
2.0
139
97
1
524
40
14
10
35
1.80
82484--82614
38
3.5
38
74
3
149
37
21
6
35
1.78
82467--82645
75
2.4
75
95
0
315
38
24
6
31
1.80
82520--82645
37
3.4
37
74
2
144
42
23
3
30
1.72

Tables:   1

The End!