genome.fa.s7441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007441.1 Hibiscus syriacus cultivar Beakdansim tig00020298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137359

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620--1729	41	2.7	41	82	0	139	32	20	15	31	1.93
2795--2850	20	2.8	20	94	0	94	19	16	16	48	1.82
3647--3725	33	2.4	33	97	0	149	31	8	20	39	1.83
7904--8037	60	2.3	59	80	3	144	20	22	32	23	1.98
8238--8309	26	2.8	25	81	10	67	30	1	2	65	1.15
10321--10517	102	1.9	102	80	8	231	25	16	24	32	1.96
11979--12130	6	25.7	6	93	1	191	55	0	44	0	0.99
15629--15666	20	1.9	20	88	0	58	42	15	15	26	1.87
18274--18551	143	1.9	143	89	2	425	31	18	23	26	1.97
20411--20456	21	2.1	22	84	4	58	65	2	4	28	1.23
20768--20815	23	2.1	23	84	0	60	35	10	18	35	1.85
21241--21303	23	2.7	23	92	0	99	38	20	4	36	1.74
21670--21732	23	2.7	23	92	0	99	38	20	4	36	1.74
22156--22241	39	2.2	39	93	0	145	18	13	18	48	1.80
22542--23156	183	3.4	183	96	0	1113	33	16	13	36	1.88
24617--24688	3	24.0	3	72	0	54	22	34	6	36	1.81
24621--24700	12	6.9	12	78	8	85	20	35	8	36	1.83
24618--24674	21	2.7	21	80	0	60	22	35	7	35	1.82
24630--24700	36	2.0	36	91	0	115	19	35	9	35	1.85
24621--24703	6	13.3	6	72	7	58	19	34	8	37	1.82
26161--27230	194	5.5	197	96	2	1887	32	16	15	35	1.90
27355--27403	19	2.6	19	90	6	73	55	10	4	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29189--29253	33	2.0	32	87	3	94	23	49	0	27	1.50
31570--31612	20	2.3	18	85	14	61	20	16	11	51	1.75
31575--31621	20	2.4	19	82	10	67	19	17	10	53	1.72
35506--35531	11	2.4	11	100	0	52	76	11	0	11	1.01
40592--40662	20	3.5	20	78	7	72	23	23	21	30	1.99
47222--47261	21	1.9	21	89	0	62	10	25	40	25	1.86
51099--51138	21	1.9	21	85	10	55	35	10	2	52	1.48
57020--57224	64	3.2	63	82	5	200	34	21	19	25	1.96
57049--57225	64	2.8	64	86	3	214	33	22	19	24	1.97
57534--57567	12	2.8	12	100	0	68	32	0	26	41	1.56
57533--57580	12	4.0	12	86	0	60	33	4	25	37	1.75
57534--57580	24	2.0	24	86	0	67	34	2	25	38	1.68
57725--57756	15	2.1	15	100	0	64	15	18	31	34	1.93
62650--62872	64	3.5	63	80	7	195	32	21	20	26	1.98
63183--63229	12	3.9	12	94	0	76	36	2	23	38	1.67
63377--63405	15	1.9	15	100	0	58	13	20	31	34	1.92
68356--68383	12	2.3	12	100	0	56	53	0	0	46	1.00
70384--70457	2	39.5	2	77	12	68	43	1	1	54	1.17
70384--70425	23	1.9	23	85	9	61	40	2	2	54	1.26
70614--70669	4	13.8	4	78	10	60	23	0	5	71	1.06
74100--74128	8	3.8	8	95	4	51	13	13	13	58	1.63
75280--75333	15	3.6	15	72	22	51	81	5	11	1	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75263--75339	20	4.1	18	75	18	68	81	5	9	3	0.96
75273--75340	19	3.7	18	78	18	68	82	4	10	2	0.92
75263--75340	30	2.8	27	80	14	95	82	5	8	3	0.95
75923--75977	22	2.5	22	100	0	110	36	27	12	23	1.91
76802--78282	106	14.0	106	89	1	2147	33	24	18	23	1.96
78955--79059	37	2.8	37	83	0	129	40	16	13	30	1.86
79532--79594	34	1.9	31	84	9	81	38	3	1	57	1.24
79739--79797	26	2.3	26	82	5	66	20	0	5	74	1.00
79865--79904	21	1.9	21	84	0	53	30	2	0	67	1.04
86265--86302	20	1.9	20	94	0	67	26	18	44	10	1.82
90177--90233	29	1.9	30	82	10	73	52	1	10	35	1.46
92428--92490	22	2.9	22	88	2	83	23	22	33	20	1.97
92522--92560	12	3.2	12	88	0	60	35	23	12	28	1.91
92576--92693	46	2.6	46	86	2	150	31	20	7	40	1.80
92780--92855	40	1.9	40	86	0	107	22	26	26	25	2.00
93079--93142	29	2.2	30	85	5	94	37	23	3	35	1.71
94755--94922	86	2.0	86	98	0	327	40	26	8	23	1.84
99453--99658	53	3.9	53	87	3	299	23	27	17	31	1.97
100062--100239	42	4.3	42	68	16	138	33	23	16	27	1.95
100186--100246	20	3.0	20	71	17	61	31	22	21	24	1.98
100234--100258	13	1.9	13	100	0	50	24	20	24	32	1.98
100460--100566	42	2.6	41	80	2	133	28	22	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100282--100725	214	2.1	215	91	0	710	32	18	15	33	1.92
100712--100825	34	3.1	37	82	11	126	24	18	21	35	1.96
111671--111807	72	1.9	72	80	5	161	27	5	12	54	1.58
111911--111945	13	2.7	13	95	0	61	8	17	0	74	1.06
112545--112597	14	3.7	14	79	2	61	18	7	1	71	1.19
115348--115450	44	2.3	44	81	0	116	41	10	17	30	1.83
124876--124927	27	2.0	26	92	3	86	7	40	9	42	1.66
124876--124935	27	2.2	26	85	8	84	6	41	10	41	1.65
127167--127211	19	2.3	19	80	7	54	44	2	6	46	1.42
136686--136724	18	2.2	18	86	9	53	33	23	25	17	1.96

Tables:   1

The End!