genome.fa.s7442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007442.1 Hibiscus syriacus cultivar Beakdansim tig00020307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76570

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7580--7622	19	2.3	18	84	11	52	55	2	0	41	1.12
22259--22333	35	2.1	35	90	0	114	33	28	28	10	1.90
22394--22445	24	2.2	24	85	0	68	42	17	9	30	1.81
22411--22500	23	3.8	23	82	4	99	38	18	14	27	1.90
24943--24990	10	5.6	9	85	14	50	22	22	35	18	1.96
24944--25003	8	7.5	8	77	21	56	21	23	38	16	1.93
24977--25051	13	5.4	13	80	14	78	14	21	45	18	1.85
24971--25026	18	2.9	18	89	7	76	14	23	44	17	1.85
24977--25038	31	2.0	31	93	0	106	12	22	45	19	1.84
27020--27094	35	2.1	35	92	0	123	33	29	28	9	1.88
27155--27206	24	2.2	24	85	0	68	42	17	9	30	1.81
27172--27261	23	3.8	23	82	4	99	38	18	14	27	1.90
29704--29751	10	5.6	9	85	14	50	22	22	35	18	1.96
29705--29764	8	7.5	8	77	21	56	21	23	38	16	1.93
29738--29812	13	5.4	13	80	14	78	14	21	45	18	1.85
29732--29787	18	2.9	18	89	7	76	14	23	44	17	1.85
29738--29799	31	2.0	31	93	0	106	12	22	45	19	1.84
36592--36714	66	1.9	63	81	9	149	36	19	18	25	1.94
48727--48787	21	2.9	21	87	0	86	47	13	34	4	1.64
49125--49227	42	2.4	43	79	9	104	32	25	18	24	1.97
49587--49624	17	2.3	17	90	4	60	68	13	2	15	1.32
54487--54740	140	1.8	139	82	7	327	39	16	13	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65388--65423	18	1.9	19	88	5	56	47	0	8	44	1.33
67612--67673	31	2.0	32	93	3	108	24	8	19	48	1.75
67724--67771	22	2.1	23	92	3	80	25	18	16	39	1.91

Tables:   1

The End!