genome.fa.s7443.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007443.1 Hibiscus syriacus cultivar Beakdansim tig00020338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65743

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186--232	19	2.6	19	90	6	71	53	10	2	34	1.48
2061--2125	21	3.1	21	93	0	103	16	30	10	41	1.83
2837--2869	16	2.1	15	94	5	57	27	30	6	36	1.81
4518--4578	20	3.1	19	80	13	70	19	14	11	54	1.71
4304--4776	181	2.6	182	91	0	741	27	16	14	42	1.87
5631--5691	21	3.2	21	65	29	64	31	4	21	42	1.74
5629--5742	35	3.2	36	90	6	178	32	4	20	42	1.71
10253--10313	21	3.2	21	65	29	64	31	4	21	42	1.74
10251--10346	35	2.7	36	93	4	167	32	5	18	43	1.72
12016--12063	25	2.0	24	84	12	62	52	6	4	37	1.46
15469--15548	4	19.2	4	72	25	60	75	3	0	21	0.96
16787--17317	109	5.0	103	83	7	398	21	19	25	32	1.97
16945--17415	109	4.4	108	87	4	578	21	19	26	32	1.97
16787--17414	218	3.0	212	82	8	640	21	20	25	32	1.97
17941--18110	65	2.6	65	93	0	297	37	12	18	31	1.88
18010--18222	102	2.1	102	93	0	372	36	12	20	31	1.89
18070--18147	37	2.1	38	85	2	104	37	12	21	28	1.90
18134--18417	90	3.0	91	81	11	381	35	11	22	30	1.90
18200--18248	24	2.0	25	88	4	73	34	10	30	24	1.89
18267--18473	36	5.9	35	72	15	169	36	13	22	28	1.92
18035--18416	192	2.0	192	94	0	665	35	12	21	31	1.90
18369--18473	36	2.9	36	94	1	174	37	14	23	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18227--18438	102	2.1	102	93	0	361	36	13	20	29	1.91
19333--19383	22	2.3	22	96	0	93	25	11	27	35	1.91
19997--20055	20	3.0	20	82	12	68	1	13	6	77	1.03
23053--23121	5	14.4	5	80	8	65	75	4	0	20	0.97
23048--23137	4	21.2	4	75	22	62	75	3	0	21	0.94
23096--23205	23	4.8	22	71	17	66	69	0	5	24	1.16
26095--26223	68	1.9	68	93	3	224	44	10	18	27	1.82
26426--26453	2	14.0	2	100	0	56	50	0	0	50	1.00
27210--27262	9	5.7	9	78	8	52	13	30	32	24	1.93
27209--27263	19	2.9	19	81	8	76	14	30	30	23	1.94
34548--34588	14	2.9	14	92	0	73	24	48	19	7	1.74
36177--36378	77	2.6	77	98	0	395	47	14	7	30	1.73
38801--38828	13	2.2	13	100	0	56	25	46	14	14	1.82
39483--39519	6	5.8	6	87	12	56	32	51	16	0	1.45
39935--39992	19	3.2	19	80	9	50	51	0	1	46	1.11
40398--40459	23	2.7	23	100	0	124	32	9	22	35	1.87
40697--40757	25	2.5	25	94	2	106	49	0	3	47	1.18
40912--40974	23	2.7	23	92	0	99	38	20	4	36	1.74
41340--41402	23	2.7	23	92	0	99	38	20	4	36	1.74
41771--41833	23	2.7	23	92	0	99	38	20	4	36	1.74
42202--42264	23	2.7	23	92	0	99	38	20	4	36	1.74
40731--44609	430	9.0	431	98	0	7342	39	12	7	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42622--42694	23	3.2	23	86	7	103	41	20	4	34	1.72
43062--43124	23	2.7	23	92	0	99	38	20	4	36	1.74
43479--43551	23	3.2	23	82	7	94	39	21	4	34	1.73
43917--43979	23	2.7	23	92	0	99	38	20	4	36	1.74
44346--44408	23	2.7	23	92	0	99	38	20	4	36	1.74
44828--44914	39	2.2	39	95	0	156	17	13	20	48	1.81
45141--45188	24	2.0	24	87	0	69	50	12	2	35	1.52
45572--45621	25	2.0	25	96	0	91	44	22	8	26	1.80
45905--45967	23	2.7	23	92	0	99	38	20	4	36	1.74
46388--46474	39	2.2	39	95	0	156	17	13	20	48	1.81
46710--46746	18	2.1	18	89	0	56	51	10	5	32	1.60
47132--47181	25	2.0	25	96	0	91	44	22	8	26	1.80
47464--47526	23	2.7	23	92	0	99	38	20	4	36	1.74
47870--47935	25	2.6	25	80	0	87	42	13	9	34	1.76
50409--50750	183	1.9	183	90	2	544	34	16	14	35	1.89
52330--52422	3	31.0	3	73	0	78	22	33	6	37	1.80
52330--52426	12	8.1	12	85	0	104	22	32	7	37	1.82
52364--52434	24	3.0	24	80	12	92	19	30	9	39	1.84
53903--54876	199	4.9	199	95	1	1715	31	16	15	36	1.90
53903--54876	395	2.5	398	94	1	1717	31	16	15	36	1.90
54989--55037	19	2.6	19	90	0	71	55	12	2	30	1.48
55617--55641	4	6.2	4	100	0	50	48	28	0	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56833--56898	33	2.0	33	90	0	105	22	48	0	28	1.51
56931--56974	21	2.1	21	91	0	70	15	31	11	40	1.83
59182--59227	20	2.5	17	75	18	56	23	15	10	50	1.75
59368--59412	20	2.3	19	88	11	72	17	15	11	55	1.68
59462--60181	227	3.1	229	95	1	1320	39	8	7	45	1.63

Tables:   1

The End!