genome.fa.s7444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007444.1 Hibiscus syriacus cultivar Beakdansim tig00020342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49084

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4822--4856	12	2.9	12	91	0	61	28	14	31	25	1.95
10794--10885	20	4.7	20	74	8	89	48	8	21	20	1.76
10769--10894	59	2.1	59	97	0	234	53	7	18	20	1.69
10899--10931	14	2.2	16	89	10	52	60	9	18	12	1.57
10802--10935	20	6.7	20	64	20	55	52	8	19	20	1.71
11699--11793	45	2.1	45	86	0	127	56	11	5	26	1.55
12760--12808	19	2.5	20	76	23	50	24	6	4	65	1.33
13405--13441	19	1.9	19	94	0	65	16	40	16	27	1.89
24965--25110	60	2.5	59	81	3	159	38	4	22	34	1.75
25589--25647	29	2.0	29	100	0	118	49	13	13	23	1.78
29508--29582	22	3.6	22	77	14	86	20	18	34	26	1.95
29529--29600	18	3.8	18	75	13	72	19	18	36	26	1.94
29508--29602	40	2.4	40	94	0	163	21	17	33	27	1.96
32140--32285	21	6.9	21	83	12	153	29	16	28	26	1.97
32142--32285	43	3.4	42	81	15	165	29	16	27	26	1.97
32142--32285	64	2.3	63	82	17	167	29	16	27	26	1.97
32843--32918	3	25.7	3	84	7	102	32	1	1	64	1.10
36624--36664	7	6.0	7	81	13	50	17	17	9	56	1.67
39840--39877	20	1.9	20	89	10	60	81	0	18	0	0.69
39840--39876	13	2.9	13	84	15	51	81	0	18	0	0.70
43147--43367	74	3.0	76	83	5	265	32	17	19	30	1.95
44622--44769	22	7.1	22	76	11	150	33	15	10	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44625--44752	20	6.3	19	79	8	96	32	16	9	42	1.80
44623--44760	42	3.3	41	80	7	147	32	16	9	41	1.81
45140--45562	219	1.9	218	84	6	561	37	12	20	28	1.90
45131--45696	109	5.1	113	80	10	555	37	14	19	27	1.91
46029--46073	15	3.2	15	81	12	60	24	0	0	75	0.80
46074--46103	3	10.0	3	100	0	60	66	0	0	33	0.92
46409--46458	20	2.5	20	96	0	91	24	24	24	28	2.00
47476--47514	18	2.1	18	86	13	53	25	5	0	69	1.09
47516--47541	11	2.4	11	100	0	52	53	0	0	46	1.00

Tables:   1

The End!