genome.fa.s7445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007445.1 Hibiscus syriacus cultivar Beakdansim tig00020346_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100381

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950--2008	31	1.9	31	89	0	91	44	5	6	44	1.52
2032--2075	22	2.0	22	95	0	79	50	11	0	38	1.39
2258--2306	22	2.2	22	85	3	62	55	8	0	36	1.30
1886--2499	223	2.8	222	88	2	941	47	9	4	38	1.57
2728--2770	21	2.0	23	86	9	63	60	4	4	30	1.37
3213--3268	26	2.2	26	90	0	85	48	0	8	42	1.34
3172--3307	66	2.1	63	84	10	179	47	0	6	44	1.34
3233--3406	38	4.5	39	76	9	144	44	3	6	44	1.47
3239--3413	78	2.2	78	79	8	187	46	3	6	44	1.45
5159--5216	24	2.4	24	80	11	57	20	6	3	68	1.27
5206--5283	27	2.9	26	71	17	70	14	5	5	75	1.14
5250--5314	31	2.1	32	85	2	87	18	9	0	72	1.11
13319--13369	23	2.2	23	85	0	66	47	1	1	49	1.24
13388--13495	18	6.0	18	70	9	60	51	1	0	45	1.18
16195--16282	24	3.7	24	76	0	86	48	17	10	23	1.77
16188--16292	48	2.2	48	84	3	131	48	16	12	22	1.79
17388--17426	18	2.2	18	85	0	51	33	15	0	51	1.44
19719--19785	30	2.2	30	97	0	125	38	20	13	26	1.90
27599--27639	16	2.6	16	84	0	64	17	19	29	34	1.94
28208--28253	20	2.5	19	83	13	60	45	2	2	50	1.26
29440--29543	16	6.6	16	72	11	81	52	25	13	8	1.68
29439--29543	47	2.2	47	98	0	201	52	25	13	8	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29587--29619	3	10.7	3	93	6	57	30	3	0	66	1.06
31152--31185	17	2.0	17	100	0	68	35	23	0	41	1.55
43281--43352	2	36.5	2	97	2	137	50	0	0	50	1.00
44997--45051	21	2.6	21	94	0	92	25	16	23	34	1.95
47354--47386	17	1.9	17	88	11	50	18	21	27	33	1.96
49774--49866	24	3.9	24	78	2	107	25	16	19	38	1.92
50041--50069	2	14.5	2	100	0	58	48	0	0	51	1.00
54476--54559	24	3.5	24	81	3	107	28	14	19	38	1.90
54490--54547	12	4.9	12	68	19	50	29	8	20	41	1.82
57207--58346	571	2.0	570	97	0	2154	31	13	23	31	1.94
62716--62796	21	3.8	21	80	9	83	18	24	34	22	1.96
62737--62798	20	2.9	21	88	7	81	19	25	33	20	1.96
71027--71081	21	2.6	21	82	0	74	25	18	27	29	1.98
71646--71686	3	13.7	3	89	0	64	4	26	0	68	1.10
72856--73106	45	5.6	44	83	5	270	39	9	19	31	1.84
72893--73105	89	2.4	89	86	6	286	41	8	18	31	1.81
74514--74579	32	2.1	32	91	0	105	13	15	31	39	1.86
82211--82276	35	2.0	32	86	13	91	24	36	18	21	1.95
82279--82326	12	3.9	13	84	13	57	22	18	39	18	1.92
82285--82326	12	3.5	12	93	0	75	26	19	35	19	1.95
82321--82407	35	2.5	35	98	0	165	27	32	21	18	1.97
82396--82450	26	2.1	26	96	0	101	20	34	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82473--82610	29	4.8	29	94	1	224	13	31	33	22	1.92
82611--82642	13	2.5	13	100	0	64	21	46	0	31	1.52
82814--82865	25	2.1	25	100	0	104	26	11	34	26	1.91
82878--82923	23	2.0	23	100	0	92	47	4	39	8	1.54
82927--83009	4	20.5	4	74	9	62	62	0	36	1	1.03
82878--82938	23	2.6	23	86	5	59	50	6	36	6	1.54
82928--83001	21	3.5	21	98	0	139	62	0	36	1	1.04
82930--83001	13	5.4	13	72	16	58	62	0	36	1	1.04
83335--83411	34	2.3	33	81	14	88	40	0	12	46	1.42
83457--83503	16	3.0	16	84	9	53	29	0	10	59	1.31
83478--83508	15	2.1	14	94	5	53	38	0	6	54	1.26
85658--85690	17	1.9	17	93	0	57	45	12	6	36	1.66
85675--85743	22	3.0	22	73	19	77	47	7	4	40	1.51
85892--86311	12	31.8	13	69	21	195	44	10	2	43	1.49
85898--86311	26	16.7	26	75	12	327	43	10	2	43	1.50
85898--86369	123	3.8	124	97	1	894	44	10	2	43	1.50
86053--86108	19	3.1	18	77	15	62	50	14	0	35	1.43
85973--86314	149	2.3	144	83	10	399	43	10	2	44	1.51
86128--86330	97	2.1	95	83	9	259	43	11	2	42	1.53
89194--89252	26	2.3	24	78	16	64	40	3	8	47	1.51
89985--90081	49	2.0	50	79	16	116	50	7	1	41	1.37
90050--90111	28	2.2	29	94	2	108	58	11	0	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90088--90136	21	2.3	21	85	3	71	53	16	0	30	1.43
90694--90757	15	4.1	15	76	11	74	17	53	7	21	1.69
90695--90765	17	4.4	16	78	7	81	16	50	9	22	1.74
90685--90751	16	4.2	16	75	7	64	16	53	7	22	1.67
90695--90765	33	2.2	32	89	2	106	16	50	9	22	1.74
90805--90864	29	2.1	29	100	0	120	18	36	31	13	1.89
91033--91073	21	2.0	21	95	0	73	29	9	19	41	1.83
91365--91414	3	17.0	3	95	4	93	34	0	0	66	0.92
92714--92816	30	3.4	30	89	0	152	17	11	9	61	1.56
98779--98850	31	2.3	31	87	0	108	48	13	13	23	1.79

Tables:   1

The End!