Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007446.1 Hibiscus syriacus cultivar Beakdansim tig00020348_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85899

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
281--369
40
2.2
41
84
6
110
33
22
19
24
1.97
339--405
21
3.2
21
91
0
107
44
20
13
20
1.85
403--439
19
1.9
19
94
0
65
35
18
16
29
1.93
1009--1093
20
4.4
19
77
11
73
12
12
22
51
1.74
3011--3078
20
3.4
20
91
0
109
35
26
20
17
1.95
3084--3136
20
2.7
20
88
2
72
49
16
18
15
1.80
3132--3169
19
2.0
19
89
0
58
10
15
28
44
1.80
3137--3194
19
3.0
19
74
2
62
12
13
22
51
1.74
3234--3277
20
2.2
20
91
0
70
13
11
22
52
1.72
3753--3852
21
4.8
21
71
7
87
21
36
19
24
1.95
5383--5460
20
3.9
20
81
6
86
44
25
16
12
1.83
5383--5460
40
2.0
40
84
5
104
44
25
16
12
1.83
5466--5697
20
12.8
20
72
20
188
21
16
24
37
1.94
5485--5689
34
5.9
34
92
3
311
20
16
25
37
1.93
5544--5635
14
5.7
14
68
26
58
16
15
28
40
1.88
5668--5950
140
2.0
140
97
0
539
42
15
12
28
1.84
9145--9315
20
8.4
20
76
11
177
23
17
26
32
1.97
9160--9316
41
3.8
41
95
0
287
22
17
26
33
1.96
9145--9316
61
2.8
61
78
11
172
23
17
26
32
1.96
9403--9448
19
2.4
19
85
3
56
21
17
30
30
1.96
9414--9450
19
1.9
19
94
0
65
21
16
29
32
1.95
9770--9809
22
1.9
20
85
10
53
57
5
0
37
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19397--19456
23
2.7
22
84
5
68
21
36
25
16
1.94
21657--21682
13
2.0
13
100
0
52
38
0
15
46
1.46
24222--24385
84
2.0
84
82
4
206
39
16
14
29
1.88
25224--25261
15
2.8
14
88
11
53
21
0
2
76
0.91
26314--26377
32
2.0
32
96
0
119
29
21
10
37
1.88
27749--27812
18
3.6
18
80
0
83
20
46
18
14
1.83
27792--27817
13
2.0
13
100
0
52
15
46
23
15
1.83
31406--31447
21
2.0
20
90
4
66
33
0
0
66
0.92
31420--31461
17
2.6
16
78
10
50
33
0
0
66
0.92
31420--31506
38
2.3
39
76
15
92
32
1
1
65
1.07
31857--32018
76
2.1
76
90
0
261
32
11
30
26
1.91
35255--35418
8
23.4
7
65
22
69
43
4
2
49
1.35
35266--35598
28
11.9
28
73
15
138
42
5
3
48
1.41
35257--35603
42
8.3
41
78
11
160
43
5
2
48
1.40
35257--35581
70
4.6
69
84
6
302
42
5
2
49
1.40
35346--35417
22
3.4
22
74
14
87
43
5
2
48
1.40
36478--36535
16
3.6
16
72
4
53
72
5
0
22
1.04
38387--38541
76
2.1
75
91
1
247
27
29
10
32
1.91
43176--43433
135
1.9
135
88
6
389
36
17
19
25
1.94
44157--44271
39
2.9
39
88
5
178
23
11
30
34
1.90
46714--47350
315
2.0
318
89
4
977
31
19
15
34
1.93
47918--47951
18
1.9
18
88
5
52
14
8
17
58
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48710--48792
33
2.6
31
83
7
112
25
7
28
38
1.82
50152--50223
30
2.4
30
83
4
92
44
34
5
15
1.70
50174--50223
15
3.3
15
80
0
64
44
38
4
14
1.63
51283--51352
35
2.0
35
94
0
122
41
14
25
18
1.88
72184--72232
24
2.1
23
84
3
62
34
22
20
22
1.97
72209--72247
17
2.3
17
90
0
60
35
25
10
28
1.89
72285--72351
14
4.6
14
76
10
62
52
2
0
44
1.16
72285--72377
45
2.1
45
82
8
109
50
5
0
44
1.25
74225--74264
5
7.6
5
83
10
53
75
0
0
25
0.81
76638--76697
2
30.5
2
78
9
61
46
1
1
50
1.21
76808--76836
2
14.5
2
100
0
58
48
0
0
51
1.00
77322--77658
112
3.1
111
64
17
266
30
20
19
29
1.97
77261--77930
219
3.1
218
83
3
740
29
18
20
31
1.96

Tables:   1

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